Gene
Gene Model ID | habu1_s1561_g05853 |
---|---|
Locus | habu1_scaffold1561 : 201996 ... 217053 : + |
To GenomeBrowser | habu1_scaffold1561:201996..217053 |
Genes list of scaffold | habu1_scaffold1561 |
Annotation by Blast2GO
Annotation | GO |
---|---|
elongation factor 2 | GO:0002244 GO:0003746 GO:0003924 GO:0005525 GO:0005634 GO:0005840 GO:0005844 GO:0006448 GO:0008494 GO:0016020 GO:0019901 GO:0044822 GO:0045948 GO:0070062 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s1561_g05853.t1 | 1 | 1 | GTP_EFTU_D2 | 106 | 180 | 1.2e-11 | 44.5 | 7.2e-15 | 2.7e-11 | 43.4 |
habu1_s1561_g05853.t1 | 1 | 1 | EFG_II | 199 | 261 | 1.4e-13 | 50.4 | 8.0e-17 | 2.9e-13 | 49.4 |
habu1_s1561_g05853.t1 | 1 | 1 | EFG_IV | 317 | 433 | 3.9e-39 | 132.9 | 2.29953e-42 | 8.6e-39 | 131.8 |
habu1_s1561_g05853.t1 | 1 | 1 | EFG_C | 435 | 523 | 1.2e-22 | 79.5 | 6.8e-26 | 2.5e-22 | 78.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s1561_g05853.t1 | gi|558220423|ref|XP_006135662.1| | PREDICTED: elongation factor 2 [Pelodiscus sinensis] | 0.0 |
habu1_s1561_g05853.t1 | gi|591355738|ref|XP_007072173.1| | PREDICTED: elongation factor 2 [Chelonia mydas] | 0.0 |
habu1_s1561_g05853.t1 | gi|641763644|ref|XP_008167076.1| | PREDICTED: elongation factor 2 [Chrysemys picta bellii] | 0.0 |
habu1_s1561_g05853.t1 | gi|564243977|ref|XP_006278757.1| | PREDICTED: elongation factor 2 [Alligator mississippiensis] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 558.6 |
Venom grand-1 | 1802.7 |
Pit, infrared sensing | 882.1 |
Nose | 632.6 |
Brain-1 | 185.5 |
Eye | 756.6 |
fetal fibroblast | 914.2 |
venom gland-2 | 1836.5 |
Brain-2 | 167.6 |
Spleen | 916.0 |
Lung | 889.3 |
Liver | 1860.2 |
Kidney | 1569.8 |
Pancreas | 1762.0 |
Small intestine | 1411.7 |
Large intestine | 969.7 |
Stomach | 1140.4 |
heart | 785.4 |
ovary | 197.4 |
cheek muscle | 1262.8 |
Transcript
Transcript ID | habu1_s1561_g05853.t1 |
---|---|
Definition | - |
>habu1_s1561_g05853.t1 aggcaatggcctcattggatgcacacagtgctttgtgcactcgcctgcttctcgtgcggcctggttcccaacaggttgtg gaccggtactgggtcaaggaccccgagggtgggggtgggtgggttggggaccgctgagttaggaggaagcagcactacca gcagcagtcactcgctttgtttgctcactgtcccttgctggagatgtgatctttctgttgcccgcccggggtttttccaa ggtattcgatgcaatcatgaacttcaagaaggaggaaacagccaagctgatcgagaaactggacattaagctggacagcg aagacaaaggaaaggaagggaagcctctgctgaaggccgtgatgagacgctggctccctgcaggggaggccttgcttcaa atgatcaccatccacctgccttctcccgtcaccgctcagaagtaccgctgtgagctgctctatgaagggccccccgatga tgaggctgccatgggcattaagaattgtgaccccaaaggacccctgatgatgtacatctccaagatggtgcccacctctg acaagggccgcttctacgccttcggccgggtgttctccggggttgtctccaccggcctcaagtgcagaatcatgggccca aactacacgccagggaagaaagaagacctctacctgaagcccatccagaggaccattctcatgatgggccgctacgtgga acccattgaagacgtgccttgcggtaacattgtgggcctggttggcgtcgaccagttcctggtcaagacgggcaccatca ccacctttgagcacgcccacaacatgcgcgtcatgaagttcagcgtcagccccgtcgtgcgcgtggccgtggaggccaag aacccggccgacctgcccaaactggtcgagggcttgaagaggttggccaaatcggaccccatggtgcagtgtatcattga ggaatctggagagcacatcatagccggagccggagaactgcatttggagatctgtctgaaagatctggaggaggatcatg cctgcattcccatcaagaaatccgatcccgtcgtctcttaccgggagaccgttagcgaggagtcggggaccttgtgcctt tccaagtcgcccaacaaacacaaccgtctgtacatgaaagcccgccccttcccggatggcctggccgaagacatcgacaa gggggatgtctcatcccgccaggagctgaagcagcgggcccggtacctggccgagaagtatgagtgggacgtggctgaag cccgtaagatctggtgctttggccccgacgggactggccccaacatcctgactgatatcaccaagggggtgcagtacctc aacgagatcaaggacagcgtggtggccggcttccagtgggccacaaaggagggggccctctgcgaggagaacctgcgggg cgtccgctttgatgtgcacgacgtcaccctgcacgccgacgccatccaccgcggcggcggccagatcatccccacagccc ggcggtgcctctacgcctgcatgctgacagctcagccccgcctgatggagccaatctacctggtggagatccagtgcccc gagcaagtagtgggcggcatttacggcgtgctgaacaggaaacgaggccacgtctttgaagagtcccaggttgctggaac ccccatgtttgtggtcaaggcctacctgcctgtgaatgaatcttttggtttcacggccgacttgagatccaacaccggag gccaggcgttcccgcagtgcgtgttcgatcactggcagatcctgcccggggatcctttcgacaacaccacccggccctgt caagtggtgatcgagacccgtaaacgcaaagggctgaaagagggcatccccgcgctcgataacttcctggataaattgta aaccaatcagaatgaaatcataaccgcgccagatcttaaaacaaaaacgagaataaattttaaaaacggctgttgtggg |
Protein
Protein ID | habu1_s1561_g05853.t1 |
---|---|
Definition | - |
>habu1_s1561_g05853.t1 MNFKKEETAKLIEKLDIKLDSEDKGKEGKPLLKAVMRRWLPAGEALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAAMG IKNCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVSTGLKCRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDV PCGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEH IIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESGTLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGDVSS RQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENLRGVRFDV HDVTLHADAIHRGGGQIIPTARRCLYACMLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVV KAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTTRPCQVVIETRKRKGLKEGIPALDNFLDKL |