Gene
| Gene Model ID | habu1_s158_g00875 |
|---|---|
| Locus | habu1_scaffold158 : 33496 ... 37867 : + |
| To GenomeBrowser | habu1_scaffold158:33496..37867 |
| Genes list of scaffold | habu1_scaffold158 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| serine arginine-rich splicing factor 2 | GO:0000166 GO:0000381 GO:0003714 GO:0005515 GO:0005667 GO:0005681 GO:0005737 GO:0006369 GO:0006406 GO:0016481 GO:0016605 GO:0016607 GO:0031124 GO:0036002 GO:0044822 GO:0070062 GO:1903507 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s158_g00875.t1 | 1 | 1 | RRM_1 | 18 | 86 | 2.7e-22 | 78.1 | 1.9e-25 | 3.9e-22 | 77.6 |
| habu1_s158_g00875.t1 | 1 | 1 | RRM_6 | 18 | 86 | 3.8e-17 | 62.0 | 2.6e-20 | 5.5e-17 | 61.5 |
| habu1_s158_g00875.t1 | 1 | 1 | RRM_5 | 30 | 90 | 1.3e-12 | 47.3 | 9.0e-16 | 1.9e-12 | 46.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s158_g00875.t1 | gi|602662375|ref|XP_007436832.1| | PREDICTED: serine/arginine-rich splicing factor 2 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s158_g00875.t1 | gi|6755478|ref|NP_035488.1| | serine/arginine-rich splicing factor 2 [Mus musculus] | 0.0 |
| habu1_s158_g00875.t1 | gi|359320233|ref|XP_003639286.1| | PREDICTED: serine/arginine-rich splicing factor 2 isoformX1 [Canis lupus familiaris] | 0.0 |
| habu1_s158_g00875.t1 | gi|585660248|ref|XP_006886244.1| | PREDICTED: serine/arginine-rich splicing factor 2 [Elephantulus edwardii] | 0.0 |
| habu1_s158_g00875.t1 | gi|116175283|ref|NP_001070697.1| | serine/arginine-rich splicing factor 2 [Sus scrofa] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 38.3 |
| Venom grand-1 | 96.7 |
| Pit, infrared sensing | 48.5 |
| Nose | 41.1 |
| Brain-1 | 22.6 |
| Eye | 38.4 |
| fetal fibroblast | 53.1 |
| venom gland-2 | 101.9 |
| Brain-2 | 22.0 |
| Spleen | 60.8 |
| Lung | 54.9 |
| Liver | 97.7 |
| Kidney | 65.0 |
| Pancreas | 120.1 |
| Small intestine | 64.8 |
| Large intestine | 59.6 |
| Stomach | 72.5 |
| heart | 40.9 |
| ovary | 22.6 |
| cheek muscle | 50.9 |
Transcript
| Transcript ID | habu1_s158_g00875.t1 |
|---|---|
| Definition | - |
>habu1_s158_g00875.t1 aacgcagcagccatctcaatatccgtagagccagctcgtgcgctccggttctttccgtctttttcagcccaacgccatga gttacgggcggccgccgccagacgtagaaggcatgacctccctgaaggtggacaacctgacatatcgtacttctccagac acacttcgccgcgtcttcgagaagtatggccgcgtgggggatgtctatattccccgcgatcgctacaccaaggagagtcg tggattcgcgttcgtgcgtttccacgacaagcgcgacgcggaggacgctatggacgccatggatggggccgtgcttgatg ggcgcgaattgcgggtccagatggcccgctatggccgacctccggattcgcaccatagccgacgagggccccctccgcgc cgatacggaagcggcggttatggacgtcgcagcagaagccccagaaggcggcgccgcagccgatcccgaagcaggagccg atccagatctcgtagcagatcgcgctacagccgttccaaatcgaggtcccgcacgcgatcccgctctcgttctacttcga agtccagatcggccaggaggtcgaagtccaagtcttcgtctgtgtccagatctcgttcccgatcaagatccaggtccaaa tccagaagccctccacctgtctctaagagggaatcgaaatcaagatctcggtctaagagccctcctaaatctcctgaaga agaaggtgctgtgtcatcttaagaaaaagatactgcaaatggatgagaaatctacataaaggatgcctttggaggagaaa cgatcatctgaatttccagtcctatggagagactcctgcacaagcaacaggctgttgaaaaggcgcagttgtgtagcagt tgagtaatgctggttagctgttaaggtggcgtgttgcagtgcagagtgcttggctgtttcctgttttctcctgattgctc ctgtaaagatgccttgtcgtgcagaaacaaatggctgtccagttaattgtaattgcctgacaactgcacttccagtcacc cgggccttgcattaaaataatggagcatacagtgagcacatctagctggtgatatacacaccttatttttccagaatggt aaattagaccatctacatatgtgaacttgcatatgaaaatgtaatgttaaagcatttgattcattccttttaagtactga tttggagtatctcttaaaacattctgtattataacctctgtgtctgtagtttaataaaagcaacacttttttggtgttca ggttttttttttaaaactgatggtttgagtcagttttgtctgttagactaggacagatcatattaatttgcaatttaaat aacactcatccagcaaattcattcctataagacctatttaatgggacttactcctatataacaaagattgtttttaaaac attgtaggctcaagtcacatttttggtattcctgtgaaatgtgtatatatccttaattcaaaggaaacatgcagcagaat tagtgttgacatgaacaattaataaaattacttttaaaaaaatgctgagaaactgatttgtatctagtggtggtcaggcg atatggagctatcaaataagcagttgatacattttcattaaaaatccattaggaatgtttctaaggtttcagtcctttat tatttatttattttttttactgataaccatcatttgaatagtgtgcatccctggaagagaagatcctgcaagttgttcct tgttggcttcaaatgactgcaatggcacacatgtgctttccatctcccatttatatagtaatccttcaatagaccagttc gcactggggggaaaagcaaataattttaaaagctttgggacaaagttggattttcaatagcatttagaaactgaaaattc ttaaaaattaatagtgagcaactgaagagattttgaatgagctaattctagtgccaaagtacataaatatgtgaaatcaa tgagaatgagagtaactataccttctgacttggtaagtagtccaaaattgggcatgagggttcctttccattaaatagtg cactgtacttataacatcttcaaagcctaaaagtttaacattttggtatgattagaaataaactatatattgctcttaca tttcttcagtcctgtgatttttgacctttaacagtatttttaattgtcaaatttccagttagtcttccttatcaacatgc aaaagggattttcaaatgcaggtctgtttacaaatttgggacaagttttcctaaattacaaaacatttacagtttatctg taaaataacagggacctgaaaatatcaccataaagaagcacttttaaaaaatctacctggtaacttgctcatcagaataa gggaccatcttaaccaccatagagatgataaaattctattttctaccatctttctatggctttagaaactagcttggtgt catgataaaaatgctgaattaaagtatttgaaataattcggaaccatcttctgattgctggggtattgaagccaaatgtg gaataagtagaggaaagagtactatgtgcacactatataactaagcaagcagagttggcttcataaaaattaaactgcac gttatcccatttttcaaattttattagtaacaggacatataatttatgctgtaaatccttgaataataattgacgttata aatgactgagcacaaagatttctaataaagtaacatccttttagaattgca |
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Protein
| Protein ID | habu1_s158_g00875.t1 |
|---|---|
| Definition | - |
>habu1_s158_g00875.t1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL DGRELRVQMARYGRPPDSHHSRRGPPPRRYGSGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRST SKSRSARRSKSKSSSVSRSRSRSRSRSKSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS |
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