Gene
| Gene Model ID | habu1_s158_g00883 |
|---|---|
| Locus | habu1_scaffold158 : 320856 ... 407253 : + |
| To GenomeBrowser | habu1_scaffold158:320856..407253 |
| Genes list of scaffold | habu1_scaffold158 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cytoglobin isoform x1 | GO:0005344 GO:0005506 GO:0015671 GO:0019825 GO:0020037 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s158_g00883.t1 | 1 | 1 | Globin | 77 | 185 | 3.5e-24 | 85.2 | 6.7e-28 | 9.9e-24 | 83.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s158_g00883.t1 | gi|602647956|ref|XP_007430398.1| | PREDICTED: cytoglobin isoform X1 [Python bivittatus] | 0.0 |
| habu1_s158_g00883.t1 | gi|602647958|ref|XP_007430399.1| | PREDICTED: cytoglobin isoform X2 [Python bivittatus] | 0.0 |
| habu1_s158_g00883.t1 | gi|557265889|ref|XP_006018373.1| | PREDICTED: cytoglobin isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s158_g00883.t1 | gi|530611998|ref|XP_005297595.1| | PREDICTED: cytoglobin isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s158_g00883.t1 | gi|564260758|ref|XP_006269284.1| | PREDICTED: cytoglobin isoform X2 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.5 |
| Venom grand-1 | 0.8 |
| Pit, infrared sensing | 5.1 |
| Nose | 1.9 |
| Brain-1 | 6.8 |
| Eye | 2.0 |
| fetal fibroblast | 114.2 |
| venom gland-2 | 0.1 |
| Brain-2 | 10.4 |
| Spleen | 4.0 |
| Lung | 18.4 |
| Liver | 37.4 |
| Kidney | 3.2 |
| Pancreas | 1.2 |
| Small intestine | 12.6 |
| Large intestine | 5.0 |
| Stomach | 9.4 |
| heart | 1.7 |
| ovary | 0.3 |
| cheek muscle | 1.3 |
Transcript
| Transcript ID | habu1_s158_g00883.t1 |
|---|---|
| Definition | - |
>habu1_s158_g00883.t1 gggccggcagtttgacacccctgatgaaaaggaacttgtgatccaggaaagggtgatattgtcaaaccagatgaatctgt gcaaagccttcctggcagctatgattcccaaatgattcagttctaaattcaagattctacttgcacacaataactttgct caacagctactgggaaatttaagttcttttgcaatccatcctctcaaggacagattttgctggctgtttttcatggagaa agaccaaggagaaatggagattgagagatgggaaagaagcgaagagctgtcagatgccgaaaggaaggtgattcaagaga cgtggaacagagtctatgcgaactgcgaggatgttggggtctccattctgatcagattttttgtcaacttcccatctgcc aagcagtacttcagccagttcaagcacatggaagatccactagagatggaaagaagcctgcagctgcggaaacatgccag gagggtcatgggggctattaatagcgtggtggagaacatatatgattcagaaaaggtctcctctgtgctagctctggtgg gcaaggcacatgcggtcaagcacaaagtcgaccctgtctacttcaagattctgactggcgtcatgctggaagtgcttgcg gaagagtacaccaatgagttcagtgctccagaggttcagagagcctgggccaagatgaggagcctcatctacactcatgt gacggctgcatacaaggaggaacccccaggtgacagcggtggcagcagcagttggagcagcagcaaagtggcagaacccc tcccacagacctgaaatgccgtctctcagaagactaaactggcaccggaaaaggatagcacccaagagaactacatctgt ctcctttaattatcccgtgtacatattagtcagtggaaatgctttataatttctatagctaaggccagctaagctataga agaccaggtgtgcataaacactctccctgaagttagccaggcaaattcaaatcatgtacactgtgacggggggggggagg gaatgtattgaatttccccagagggaaacaaaaattatatagatcttgactgttatgattcatccacattgataactctg gagacttactgtttttgtctgtcttgaagaggacttttcatcaaatggcattgaattgatacgtttccatcttttgtact aaggtgagaatgtacaagttccaatatttgatttctgcaagtacttttgtgcccatatatcgctgatgactacgtgagtg tccttgcttccccaccccccaaaatactagtgatgtgtgcataagtgcttgcaggatctcatttccgcatgatacattct gaccatgtccttaaaaagacatttgatctcaatacatttagtctagatttcaaaatct |
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Protein
| Protein ID | habu1_s158_g00883.t1 |
|---|---|
| Definition | - |
>habu1_s158_g00883.t1 MNLCKAFLAAMIPKXFSSKFKILLAHNNFAQQLLGNLSSFAIHPLKDRFCWLFFMEKDQGEMEIERWERSEELSDAERKV IQETWNRVYANCEDVGVSILIRFFVNFPSAKQYFSQFKHMEDPLEMERSLQLRKHARRVMGAINSVVENIYDSEKVSSVL ALVGKAHAVKHKVDPVYFKILTGVMLEVLAEEYTNEFSAPEVQRAWAKMRSLIYTHVTAAYKEEPPGDSGGSSSWSSSKV AEPLPQT |
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