Gene
| Gene Model ID | habu1_s158_g00885 |
|---|---|
| Locus | habu1_scaffold158 : 470005 ... 508170 : + |
| To GenomeBrowser | habu1_scaffold158:470005..508170 |
| Genes list of scaffold | habu1_scaffold158 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| inactive rhomboid protein 2 | GO:0044425 GO:0044464 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s158_g00885.t1 | 2 | 1 | Rhomboid_SP | 96 | 223 | 0.0 | 203.5 | 0.0 | 0.0 | 192.4 |
| habu1_s158_g00885.t1 | 2 | 2 | Rhomboid_SP | 227 | 255 | 0.0 | 203.5 | 1.1e-06 | 0.0085 | 15.7 |
| habu1_s158_g00885.t1 | 1 | 1 | Rhomboid | 530 | 595 | 3.3e-12 | 46.6 | 4.4e-16 | 3.3e-12 | 46.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s158_g00885.t1 | gi|564260760|ref|XP_006269285.1| | PREDICTED: inactive rhomboid protein 2 [Alligator mississippiensis] | 0.0 |
| habu1_s158_g00885.t1 | gi|729761479|ref|XP_010577683.1| | PREDICTED: inactive rhomboid protein 2 isoform X2 [Haliaeetus leucocephalus] | 0.0 |
| habu1_s158_g00885.t1 | gi|701391896|ref|XP_009994863.1| | PREDICTED: LOW QUALITY PROTEIN: inactive rhomboid protein 2 [Chaetura pelagica] | 0.0 |
| habu1_s158_g00885.t1 | gi|557265883|ref|XP_006018370.1| | PREDICTED: inactive rhomboid protein 2 isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s158_g00885.t1 | gi|729761477|ref|XP_010577682.1| | PREDICTED: inactive rhomboid protein 2 isoform X1 [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.2 |
| Venom grand-1 | 3.3 |
| Pit, infrared sensing | 2.8 |
| Nose | 4.4 |
| Brain-1 | 0.8 |
| Eye | 1.4 |
| fetal fibroblast | 2.7 |
| venom gland-2 | 1.2 |
| Brain-2 | 1.1 |
| Spleen | 3.2 |
| Lung | 4.7 |
| Liver | 1.2 |
| Kidney | 0.8 |
| Pancreas | 6.8 |
| Small intestine | 4.0 |
| Large intestine | 3.3 |
| Stomach | 1.9 |
| heart | 0.8 |
| ovary | 30.4 |
| cheek muscle | 0.7 |
Transcript
| Transcript ID | habu1_s158_g00885.t1 |
|---|---|
| Definition | - |
>habu1_s158_g00885.t1 tcgcggcattaaaaaggttgagaaccactgaactaggggaaggttaatatgaagagaatgatttggcttgcaaagaatga aaagcatttgatcagagtcactcagtgagcttatgcctaagatagacccagatgtagatagactgataccttccagtcca agatggcagacagcgataaaaatggaagcagccgttctagcaccagcaacagtcgacttcagagcaagaagccccccaac ctgtctataatgatcccaccagtgaagacagaagaggaaagcagccaaacagtgcttctgaaaaaaaacccagctcttca aaagagtgtgagcctccaagagtcgagattgaaaagacaggacagcaactttgaaagacatcccgccttgcataggcaaa cctcattgtcccagagtattcgcaaaggagcagctcagtggtttggcgtcagcaatgactgggatggaaagcaacagaat tggcagcgcaagagccttcagcactgcagcctgcgctatggaaaactcaaacctgcctatagggaaatagaagtgagcag ccaggaggtgccttctttccaaggcacagaatccccaaagccaacaaaaatgcccaagattgtagatcctttggcccgag gccgtcccttcaggcacccagatgaagtggatcgtccacgtactccacatcctgtccttccccctctgactcctggagtt gtgtccttggcatcattaggtagtgtacggtcaggctacacccgcctgccccgcaggaaaaggaaatcggtggcccatat gagctttaaggcagctgcagcaattatcagagttgacgcacatgaggagatgtgctccatgcaagatgatgtatttgaat ccccaccgctctctgctacttactaccgtgggcttcccttacaagaagatagcaagtcaccagaagttgaccaacctttc cagcatgtaggagctgttgccctcaaaagcctccaacaaaaagcttctgctcctaagaggggcactcggattgcttccag ggtgaagcactttgcctttgaccgcaagaagcgctactatgggctgggagtggtgggcaactggctgaacagaacgtatc gtcggagcatcagcagtgtggtacggtcacagctggagatcacagacagccacaggccttactttacgtactggatcacg tttgttcacatcatcatcactctacttatcatttgcacttacggatttgctccaatcggctttgctcagcatgtgaaaac agaattaatattacgaaacaaaggcgtgtatgaaagtgtgaaatatatccaacaggagaacttctggattggtccaagtt cgattgatttgatccatctgggagccaagttctccccctgtatccggaaggaccaacagattgagaagctggtccagaaa gagagggagaaagagcgtcactctggctgctgtgtccagaatgataactctggttgtgttcagactttgcgtgaggattg ctcgatatgtactgatcaggtcaaaagtaaccacactggtttcttgcatatggactgtgatattaaaggaaggccatgct gcattggaaccaaaggcagctgtgagatcacaactcgggagtactgtgagttcatgcatggccacttccatgaagaagca actctttgttcacaggttcactgcatgggtgaagtgtgtggcctcttaccatttcttaacccagagattccagatcagtt ctacaggctctggttgtctttattccttcatgcagggattatccattgtctggtgtctgtgatcttccagatgacagtgc tcagagatttggaaaagctggcaggctggcttcgtatcactatcattttcatcctcagtggcatcacaggcaatctggct agtgccatcttcctaccctacagggcagagggcactgatgtaaaagtaggatctatatttgctctacatgagcaaaaggc agcatatgaacaataagaagaaatggcttttaaaatattcctgtataactactgaatttatctttttctcatacatattc ccttctttctctgtctccatgctggctttgttcagacaatcatatgctctggtaatcatttgatacatgaacaatggttc aggttgagaatgcaatcatttcatgaaactgaaaaacaagccatcaaattacagttaattacagctttcccttaattcca aagggtgatattatggttaaagacttttgatcacttctgaaaatgaagtcatggttttgaagtgagtatcacatactgaa ataattatagctttccagtgtggatataaagaggaagtgttcttaacccaaa |
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Protein
| Protein ID | habu1_s158_g00885.t1 |
|---|---|
| Definition | - |
>habu1_s158_g00885.t1 MADSDKNGSSRSSTSNSRLQSKKPPNLSIMIPPVKTEEESSQTVLLKKNPALQKSVSLQESRLKRQDSNFERHPALHRQT SLSQSIRKGAAQWFGVSNDWDGKQQNWQRKSLQHCSLRYGKLKPAYREIEVSSQEVPSFQGTESPKPTKMPKIVDPLARG RPFRHPDEVDRPRTPHPVLPPLTPGVVSLASLGSVRSGYTRLPRRKRKSVAHMSFKAAAAIIRVDAHEEMCSMQDDVFES PPLSATYYRGLPLQEDSKSPEVDQPFQHVGAVALKSLQQKASAPKRGTRIASRVKHFAFDRKKRYYGLGVVGNWLNRTYR RSISSVVRSQLEITDSHRPYFTYWITFVHIIITLLIICTYGFAPIGFAQHVKTELILRNKGVYESVKYIQQENFWIGPSS IDLIHLGAKFSPCIRKDQQIEKLVQKEREKERHSGCCVQNDNSGCVQTLREDCSICTDQVKSNHTGFLHMDCDIKGRPCC IGTKGSCEITTREYCEFMHGHFHEEATLCSQVHCMGEVCGLLPFLNPEIPDQFYRLWLSLFLHAGIIHCLVSVIFQMTVL RDLEKLAGWLRITIIFILSGITGNLASAIFLPYRAEGTDVKVGSIFALHEQKAAYEQ |
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