Gene
| Gene Model ID | habu1_s16115_g21616 |
|---|---|
| Locus | habu1_scaffold16115 : 46959 ... 79375 : - |
| To GenomeBrowser | habu1_scaffold16115:46959..79375 |
| Genes list of scaffold | habu1_scaffold16115 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rab gtpase-activating protein 1 | GO:0003677 GO:0005096 GO:0005829 GO:0017137 GO:0043547 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s16115_g21616.t2 | 1 | 1 | RabGAP-TBC | 23 | 183 | 0.0 | 166.9 | 0.0 | 0.0 | 166.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s16115_g21616.t2 | gi|675633106|ref|XP_008945233.1| | PREDICTED: rab GTPase-activating protein 1-like [Merops nubicus] | 0.0 |
| habu1_s16115_g21616.t2 | gi|701328820|ref|XP_009976770.1| | PREDICTED: rab GTPase-activating protein 1 [Tauraco erythrolophus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 18.0 |
| Venom grand-1 | 8.7 |
| Pit, infrared sensing | 15.8 |
| Nose | 19.4 |
| Brain-1 | 11.9 |
| Eye | 12.7 |
| fetal fibroblast | 14.6 |
| venom gland-2 | 15.6 |
| Brain-2 | 10.0 |
| Spleen | 5.6 |
| Lung | 18.9 |
| Liver | 5.0 |
| Kidney | 7.4 |
| Pancreas | 5.3 |
| Small intestine | 9.2 |
| Large intestine | 14.6 |
| Stomach | 12.4 |
| heart | 14.6 |
| ovary | 8.0 |
| cheek muscle | 22.1 |
Transcript
| Transcript ID | habu1_s16115_g21616.t1 |
|---|---|
| Definition | - |
>habu1_s16115_g21616.t1 ggttcgtattttatgaccgttgctgtgtccccaagatcacgcgatcctccgtgaaaggcaaaaatcaatggagaagcagg attcgtttaacgaccaggtggctaccttatcaactggagcgactgacttaaccacggaggcaagaaaagtggagtctccc caggacagcgccatcacccgggacatcaaccggaccttccctgcccacgactacttcaaggacacgggaggagacgggca ggactcgctgtataaaatatgcaaggcctattcggtctacgacgaagagatcggctactgccaagggcagtcgttcctgg ccgcggtgctgctcctacacatgcctgaagaacaggcctttagtgttctggtcaaaatcatgttcgactacggactcagg gagcttttcaaacagaattttgaggacctgcactgcaagttttatcagctggaacgcctcatgcaggaatacatccccga cctgtacacccacttcctagagatcagcttagaagcccacatgtacgcctcccagtggttcctcaccctcttcaccgcaa agttccccctctacatggtcttccacatcatcgacctgctgctgtgtgagaccaccagggacgacttgctgctgacggat tttgagggggctttaaagttcttccgcgtgcagctgcccaagaggtatcggtcggaggagaacgccaagaaactgatgga gctggcatgtagcatgaagattagccaaaagaagttgaagaaatacgagcgggaatatcacaccatgcgggagcagcagg cccagcaggaggatcccattgaaaggtttgagagagaaaaccggcgcttgcaggaagccaacatgaggctggagcaggag aacgacgacctggcccacgagctggtgaccagcaagatcgccctgcggaaggacctggacaacgccgaggaaaaagccga cgcgctgaacaaggaactgctgatgaccaagcagaagctgatagacgccgaggatgaaaagagaaggctggaggaggaat cggctcagctgaaggagatgtgtcggagagaactggacaaggccgagttggagatcaagaaaaacagctccatcattggc gactacaagcagatctgttcccagttgagtgagaggctggagaagcagcaggtagccaataaagctgaaattgagaaaat ccggcaaaagatcgacaactgtgaacattgtcgggagtttttcaacaaagaagggcggctgaaggtggtcagcgtcccca gggagggctccgacgaggacaccgacgaggagaaggaggggctgaagaaccagttacgagaaatggagttggagctggcc cagaccaagttgcagctggtggaggccgaatgcaaaatccaggacctggaacacgacctgggacaggcgctgaacgaggt gcaggcctcgcgcaaaacctggttcaaccgaacgctcagctctataaagacagtgaccggcgtccaggggaaagagacaa agcaggcgggagagagacgacggcccggagaacggagggagcttcgttttgaccgctgctactgctgccgaactcacccg ctgagggccaggctccacgtcccccttcccatcaaacactccctaatttgtaactacacaagtagactaacgctaggcga cgacgcaaactgagataacgaggtgaagccagccttgagcgttcacgatttctcctctcccccctcccttaactgtatac atgagtatctttccctgttgaataataacagaggaaaaaacaaaacccatatcgctgtaactccattgataataaacaaa accaaccaacgcgtggac |
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| Transcript ID | habu1_s16115_g21616.t2 |
| Definition | - |
>habu1_s16115_g21616.t2 ggttcgtattttatgaccgttgctgtgtccccaagatcacgcgatcctccgtgaaaggcaaaaatcaatggagaagcagg attcgtttaacgaccaggtggctaccttatcaactggagcgactgacttaaccacggaggcaagaaaagtggagtctccc caggacagcgccatcacccgggacatcaaccggaccttccctgcccacgactacttcaaggacacgggaggagacgggca ggactcgctgtataaaatatgcaaggcctattcggtctacgacgaagagatcggctactgccaagggcagtcgttcctgg ccgcggtgctgctcctacacatgcctgaagaacaggcctttagtgttctggtcaaaatcatgttcgactacggactcagg gagcttttcaaacagaattttgaggacctgcactgcaagttttatcagctggaacgcctcatgcaggaatacatccccga cctgtacacccacttcctagagatcagcttagaagcccacatgtacgcctcccagtggttcctcaccctcttcaccgcaa agttccccctctacatggtcttccacatcatcgacctgctgctgtgtgagaccaccagggacgacttgctgctgacggat tttgagggggctttaaagttcttccgcgtgcagctgcccaagaggtatcggtcggaggagaacgccaagaaactgatgga gctggcatgtagcatgaagattagccaaaagaagttgaagaaatacgagcgggaatatcacaccatgcgggagcagcagg cccagcaggaggatcccattgaaaggtttgagagagaaaaccggcgcttgcaggaagccaacatgaggctggagcaggag aacgacgacctggcccacgagctggtgaccagcaagatcgccctgcggaaggacctggacaacgccgaggaaaaagccga cgcgctgaacaaggaactgctgatgaccaagcagaagctgatagacgccgaggatgaaaagagaaggctggaggaggaat cggctcaggttggggcaggatcgggccggaagggagctggggagctgaaggagatgtgtcggagagaactggacaaggcc gagttggagatcaagaaaaacagctccatcattggcgactacaagcagatctgttcccagttgagtgagaggctggagaa gcagcaggtagccaataaagctgaaattgagaaaatccggcaaaagatcgacaactgtgaacattgtcgggagtttttca acaaagaagggcggctgaaggtggtcagcgtccccagggagggctccgacgaggacaccgacgaggagaaggaggggctg aagaaccagttacgagaaatggagttggagctggcccagaccaagttgcagctggtggaggccgaatgcaaaatccagga cctggaacacgacctgggacaggcgctgaacgaggtgcaggcctcgcgcaaaacctggttcaaccgaacgctcagctcta taaagacagtgaccggcgtccaggggaaagagacaaagcaggcgggagagagacgacggcccggagaacggagggagctt cgttttgaccgctgctactgctgccgaactcacccgctgagggccaggctccacgtcccccttcccatcaaacactccct aatttgtaactacacaagtagactaacgctaggcgacgacgcaaactgagataacgaggtgaagccagccttgagcgttc acgatttctcctctcccccctcccttaactgtatacatgagtatctttccctgttgaataataacagaggaaaaaacaaa acccatatcgctgtaactccattgataataaacaaaaccaaccaacgcgtggac |
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Protein
| Protein ID | habu1_s16115_g21616.t1 |
|---|---|
| Definition | - |
>habu1_s16115_g21616.t1 MEKQDSFNDQVATLSTGATDLTTEARKVESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQG QSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQLERLMQEYIPDLYTHFLEISLEAHMYASQWFLT LFTAKFPLYMVFHIIDLLLCETTRDDLLLTDFEGALKFFRVQLPKRYRSEENAKKLMELACSMKISQKKLKKYEREYHTM REQQAQQEDPIERFERENRRLQEANMRLEQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEDEKRR LEEESAQLKEMCRRELDKAELEIKKNSSIIGDYKQICSQLSERLEKQQVANKAEIEKIRQKIDNCEHCREFFNKEGRLKV VSVPREGSDEDTDEEKEGLKNQLREMELELAQTKLQLVEAECKIQDLEHDLGQALNEVQASRKTWFNRTLSSIKTVTGVQ GKETKQAGERRRPGERRELRFDRCYCCRTHPLRARLHVPLPIKHSLICNYTSRLTLGDDAN |
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| Protein ID | habu1_s16115_g21616.t2 |
| Definition | - |
>habu1_s16115_g21616.t2 MEKQDSFNDQVATLSTGATDLTTEARKVESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQG QSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQLERLMQEYIPDLYTHFLEISLEAHMYASQWFLT LFTAKFPLYMVFHIIDLLLCETTRDDLLLTDFEGALKFFRVQLPKRYRSEENAKKLMELACSMKISQKKLKKYEREYHTM REQQAQQEDPIERFERENRRLQEANMRLEQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEDEKRR LEEESAQVGAGSGRKGAGELKEMCRRELDKAELEIKKNSSIIGDYKQICSQLSERLEKQQVANKAEIEKIRQKIDNCEHC REFFNKEGRLKVVSVPREGSDEDTDEEKEGLKNQLREMELELAQTKLQLVEAECKIQDLEHDLGQALNEVQASRKTWFNR TLSSIKTVTGVQGKETKQAGERRRPGERRELRFDRCYCCRTHPLRARLHVPLPIKHSLICNYTSRLTLGDDAN |
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