Gene
| Gene Model ID | habu1_s16115_g21629 |
|---|---|
| Locus | habu1_scaffold16115 : 372416 ... 394558 : + |
| To GenomeBrowser | habu1_scaffold16115:372416..394558 |
| Genes list of scaffold | habu1_scaffold16115 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tnf receptor-associated factor partial | GO:0005488 GO:0044763 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s16115_g21629.t1 | 1 | 1 | MATH | 389 | 488 | 1.6e-15 | 57.4 | 2.3e-18 | 1.6e-15 | 57.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s16115_g21629.t1 | gi|602629227|ref|XP_007421541.1| | PREDICTED: TNF receptor-associated factor 1 [Python bivittatus] | 0.0 |
| habu1_s16115_g21629.t1 | gi|699597967|ref|XP_009868902.1| | PREDICTED: TNF receptor-associated factor 1, partial [Apaloderma vittatum] | 0.0 |
| habu1_s16115_g21629.t1 | gi|513213046|ref|XP_004946051.1| | PREDICTED: TNF receptor-associated factor 1 isoform X8 [Gallus gallus] | 0.0 |
| habu1_s16115_g21629.t1 | gi|514771269|ref|XP_005025589.1| | PREDICTED: TNF receptor-associated factor 1 isoform X1 [Anas platyrhynchos] | 0.0 |
| habu1_s16115_g21629.t1 | gi|704536386|ref|XP_010191952.1| | PREDICTED: TNF receptor-associated factor 1, partial [Mesitornis unicolor] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.7 |
| Venom grand-1 | 0.3 |
| Pit, infrared sensing | 0.7 |
| Nose | 0.8 |
| Brain-1 | 0.4 |
| Eye | 0.6 |
| fetal fibroblast | 12.3 |
| venom gland-2 | 0.1 |
| Brain-2 | 0.6 |
| Spleen | 6.0 |
| Lung | 1.6 |
| Liver | 1.3 |
| Kidney | 0.2 |
| Pancreas | 0.1 |
| Small intestine | 1.4 |
| Large intestine | 1.2 |
| Stomach | 0.5 |
| heart | 1.1 |
| ovary | 0.6 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s16115_g21629.t1 |
|---|---|
| Definition | - |
>habu1_s16115_g21629.t1 gtcgtcactgtgtttgtcgggggggaattcaaagggcggctgtgtaacttcctgtcacagctgcctcaaccctttcagct gggctcctccgttcagcccagccgaacatccttggaaggaaggacatcttgctagctttagcaggaactgctgcggatgg cagacagacagagaaacagcagcagcagcagcaacagctgtgctggtcccccaacagcctgcccccctctggatggagcc aaacagggctccccgttttgcatccgccccaatgccggagagccgaaagacctctgcagccacagcaggatccttctgca aggagacttgcaaattccctgcaggaacccctgttacacagcctgcctgacctggaggatacgaaataatagcaacccca cttgccaggattgtaaagaaggagattctgaacttgacgggaaagacaatttaccattcgaagaaaagggtccctgcaag gccacccttagcaaggagattccggaatttgccgtgcattgtgggataccgggatgcatctggaagggtccaatgagcaa tttggaagatcatcgccgcatgtgtgaatatgtcctggtcaactacggtcaggcggcggtgtgcagggtgtcgatggatc cagatgctggcgataatcccgaaacatccaggaacgaacgccagaatccttcaggactttgccccagggatgaaaattgc cgattttccaggatcggatgtttattcaagggcaacgcaggggatcaaaacgttcatgagaagaacgcggcaggaagaca cctgttgctgctgctccagtatgtcaaccacctgaagggcagttcatctccaagagggagtcagtccaactcatctttaa tagatgccaagcttttgatgaaggctcctctcaccctgatgattcaggatcctgggggagaaagctccttctccgcctcg ccggtggaggagtgggaggtgagctggtgcaccctcttgagaagagtgaagagggtctcttggctggagaccaagctgca agtctttgagaacatcacatcggtgctgagcaaggagatggttacatcccgccagaaaatcctggccttccggggacagc ggggccttgaccaagatatgatccgtggcttagagctgaagattgctgatctccagcgatgcctggcgcagaaagacgcc gctctcgtcaggctggggaagaggcttcacttctccgagcaagcgtcttacgatggcgtcttcctttggaaaattacaga tgttcatcagaagtgctacgaagccatctgcgggaaggtcgacggctttcagtcgcccgcattctacacctcccgatatg ggtacaaactgtgcatgaggatctacctgaatggagaaggcagaggcagaggaacccatgtctcccttttcatcgtactt ctgaaaggggactatgatgcactgctgccctggcctttcacacacaagatcaccttcacgctactcagccaggaccacgg agaccacctggtgacccctctccatccagaccctacctccgcctcgtttcagaggccagcggctgacacgaacgaggcca gcggctttgcccaattcgtgagtgatgctaagcaaagttgcctggtgacctttgaagataactccaaatactgggtgctc tggaaggacatccagcatgctggtatccccagtgaacagccggaatgtaacatctgcctggagaagacatcggagcctct gaatgagatcttgatctgtgggaagtgtggagttgaagggagtggggtttgcagagaggaggaagaggaagaggaagagg aagaagaagaagaagaagaagagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagactcagactcagatccttggttacca ccagcagtgccacattcctctggtggggagccttgaggagtccctggtgaccccctggttttgtcggagatgtatttttg tactagctgtgaggttggccgcaactcctgtggcagaacgaggccctctccttctagatgcactaaacagctacaaaagc aggtttctctgcgggagggaaatcaagaaaaagaaatgcatctttcgcctgcgggttcgagtcccgccgtatcctcccag caaaatcctcccggagaagttggcaagactgagcgagccaaagaaaagggggaaatgcaaacacacccacaaaagcagtt tgcagcctcaccaatcccagcacgaacggagaaggaaaaggcccaaattcctcttggaggatgctattccaagtagtgat tttgcctcggcttggagcaccaaccatcacctggcctgcatctttgatttctcgctggatgaaatccagagtctaaaaag attccacggacgctgccagcacgtcgggatcagcctcaacgagtctgtcctgtgaatcaaggtgacattagtcctttgtc aattgaaaatgctttataaattgaaaaaaaaagtgtaccagg |
|
Protein
| Protein ID | habu1_s16115_g21629.t1 |
|---|---|
| Definition | - |
>habu1_s16115_g21629.t1 MADRQRNSSSSSNSCAGPPTACPPLDGAKQGSPFCIRPNAGEPKDLCSHSRILLQGDLQIPCRNPCYTACLTWRIRNNSN PTCQDCKEGDSELDGKDNLPFEEKGPCKATLSKEIPEFAVHCGIPGCIWKGPMSNLEDHRRMCEYVLVNYGQAAVCRVSM DPDAGDNPETSRNERQNPSGLCPRDENCRFSRIGCLFKGNAGDQNVHEKNAAGRHLLLLLQYVNHLKGSSSPRGSQSNSS LIDAKLLMKAPLTLMIQDPGGESSFSASPVEEWEVSWCTLLRRVKRVSWLETKLQVFENITSVLSKEMVTSRQKILAFRG QRGLDQDMIRGLELKIADLQRCLAQKDAALVRLGKRLHFSEQASYDGVFLWKITDVHQKCYEAICGKVDGFQSPAFYTSR YGYKLCMRIYLNGEGRGRGTHVSLFIVLLKGDYDALLPWPFTHKITFTLLSQDHGDHLVTPLHPDPTSASFQRPAADTNE ASGFAQFVSDAKQSCLVTFEDNSKYWVLWKDIQHAGIPSEQPECNICLEKTSEPLNEILICGKCGVEGSGVCREEEEEEE EEEEEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKTQTQILGYHQQCHIPLVGSLEESLVTPWFCRRCI FVLAVRLAATPVAERGPLLLDALNSYKSRFLCGREIKKKKCIFRLRVRVPPYPPSKILPEKLARLSEPKKRGKCKHTHKS SLQPHQSQHERRRKRPKFLLEDAIPSSDFASAWSTNHHLACIFDFSLDEIQSLKRFHGRCQHVGISLNESVL |
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