Gene
| Gene Model ID | habu1_s16115_g21635 |
|---|---|
| Locus | habu1_scaffold16115 : 542115 ... 549226 : + |
| To GenomeBrowser | habu1_scaffold16115:542115..549226 |
| Genes list of scaffold | habu1_scaffold16115 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| negative elongation factor b-like | GO:0005737 GO:0032021 GO:0045892 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s16115_g21635.t1 | 2 | 1 | COBRA1 | 70 | 413 | 0.0 | 719.2 | 0.0 | 0.0 | 688.1 |
| habu1_s16115_g21635.t1 | 2 | 2 | COBRA1 | 415 | 473 | 0.0 | 719.2 | 6.9e-13 | 5.1e-09 | 35.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s16115_g21635.t1 | gi|602629199|ref|XP_007421528.1| | PREDICTED: negative elongation factor B-like [Python bivittatus] | 0.0 |
| habu1_s16115_g21635.t1 | gi|327287348|ref|XP_003228391.1| | PREDICTED: negative elongation factor B [Anolis carolinensis] | 0.0 |
| habu1_s16115_g21635.t1 | gi|530645051|ref|XP_005309194.1| | PREDICTED: negative elongation factor B isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s16115_g21635.t1 | gi|558226208|ref|XP_006137251.1| | PREDICTED: negative elongation factor B-like [Pelodiscus sinensis] | 0.0 |
| habu1_s16115_g21635.t1 | gi|697456027|ref|XP_009666510.1| | PREDICTED: negative elongation factor B, partial [Struthio camelus australis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 11.1 |
| Venom grand-1 | 17.1 |
| Pit, infrared sensing | 12.0 |
| Nose | 9.5 |
| Brain-1 | 7.6 |
| Eye | 12.1 |
| fetal fibroblast | 20.9 |
| venom gland-2 | 13.4 |
| Brain-2 | 8.2 |
| Spleen | 11.5 |
| Lung | 12.7 |
| Liver | 8.4 |
| Kidney | 14.6 |
| Pancreas | 12.9 |
| Small intestine | 13.6 |
| Large intestine | 9.4 |
| Stomach | 11.7 |
| heart | 14.3 |
| ovary | 8.8 |
| cheek muscle | 28.3 |
Transcript
| Transcript ID | habu1_s16115_g21635.t1 |
|---|---|
| Definition | - |
>habu1_s16115_g21635.t1 gggcgggaccccgcgcgggctgcggagcctggcatcatgttcgccggcttgcaagagctcgggtccgccctccctttcct ggacctccatggcacccctaggctggagttccaccagtcggtgtttgatgaactgcgtgagaagcttctggagagggtct cggctattgccgctgaaggaaaggccaatgaaaggtacaaaaagctagaagatctcctggagaagagcttccctttggta aagatgccgtccatccagccagtggtgatgtgcgtcatgaaacatttgcccaaggtccccgaaaaaaagttgaagctggt gatggccgacaaggacctgtatagagcctgtgccgtggaagtgaaacgccagatctggcaagataaccaggctctgttcg gagacgaggtctccccgttgctgaagcagtacattctggagaaggagaacgctttattcagcagtgacctctccgtgctg cagaacttcttcagcccttctcctaagaccaggcggcagggagaggtggttcagaagctgacccagatgatcgggaagaa cgtgaagctgtacgacatggtgcttcagttcctccggacgctcttcctccggacgcggaacgtccattattgcacgctga gggcggagctcctgatgtcgctccacgatctggacatcagcgagatctgcacggtggacccctgccacaagtttacgtgg tgcctcgacgcttgcattcgggagaagtttgtcgacaacaagcgggcgcgggagctgcagggtttcctcgacggagtgaa aaaggcccaagagcaagtgctgggggacctgtcgatgatcttgtgcgatccgtttgccatcaacaccttggttttgagca cgatccggcatttgcaggagctgattggtcaagaagtattacccagggaaagcccagaactcttactccttctgaggatg ctgtccctgggacaaggggcttgggatgtgattgacagccagatcttcaaagaacccaaactggaagtggatttgatcac caaatttctgccaatgttgatggccttcgtggtggacgactacaccttcaccgtggatcagaagctgccttcggaagaga aaggtccagctccttaccccagcaccatccctgagttgtttccaaaatttctccaagaacagcggatcgcctgtgaggtg ggcctttactacgtgctccacatcaccaagcaaaggaacaagaacgccctgcttcgcttggtcccaaccctgatcttccc tgccaggctggagtcgctgcagaaggccttggaaccaaccaagcagagcagcgaagcggtgaaagagctttacaaccagc tgggcgagaaactggaagtccgcaagcctagccccgtcccagaagctgaggctccaccgatggatttgcccctcccaaca gtgtcttctaccccggttccaccatagatgcaacccccaccccctcctcannnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnggggggggggggacaaaggttggacacactcagcttgcttgggacacggtcacctggc caaccttgaacgcagctactcggatgcctactccgcatctcatccccacggtgtgggtgtctcccaggaagggtgctgca caattaaagatagtgggttattgttgtttt |
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Protein
| Protein ID | habu1_s16115_g21635.t1 |
|---|---|
| Definition | - |
>habu1_s16115_g21635.t1 MFAGLQELGSALPFLDLHGTPRLEFHQSVFDELREKLLERVSAIAAEGKANERYKKLEDLLEKSFPLVKMPSIQPVVMCV MKHLPKVPEKKLKLVMADKDLYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKENALFSSDLSVLQNFFSPSPKTRR QGEVVQKLTQMIGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDISEICTVDPCHKFTWCLDACIREKFVD NKRARELQGFLDGVKKAQEQVLGDLSMILCDPFAINTLVLSTIRHLQELIGQEVLPRESPELLLLLRMLSLGQGAWDVID SQIFKEPKLEVDLITKFLPMLMAFVVDDYTFTVDQKLPSEEKGPAPYPSTIPELFPKFLQEQRIACEVGLYYVLHITKQR NKNALLRLVPTLIFPARLESLQKALEPTKQSSEAVKELYNQLGEKLEVRKPSPVPEAEAPPMDLPLPTVSSTPVPP |
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