Gene
| Gene Model ID | habu1_s17097_g21883 |
|---|---|
| Locus | habu1_scaffold17097 : 287246 ... 304223 : + |
| To GenomeBrowser | habu1_scaffold17097:287246..304223 |
| Genes list of scaffold | habu1_scaffold17097 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| down syndrome critical region protein 3 isoform x1 | GO:0005634 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s17097_g21883.t2 | 1 | 1 | Vps26 | 30 | 295 | 0.0 | 221.3 | 0.0 | 0.0 | 221.0 |
| habu1_s17097_g21883.t2 | 1 | 1 | Arrestin_N | 32 | 149 | 3.8e-07 | 30.0 | 2.2e-10 | 1.7e-06 | 27.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s17097_g21883.t2 | gi|694649739|ref|XP_009481755.1| | PREDICTED: Down syndrome critical region protein 3 [Pelecanus crispus] | 0.0 |
| habu1_s17097_g21883.t2 | gi|697837697|ref|XP_009639208.1| | PREDICTED: Down syndrome critical region protein 3 [Egretta garzetta] | 0.0 |
| habu1_s17097_g21883.t2 | gi|733872879|ref|XP_010721800.1| | PREDICTED: Down syndrome critical region protein 3 isoform X2 [Meleagris gallopavo] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 12.1 |
| Venom grand-1 | 6.7 |
| Pit, infrared sensing | 10.3 |
| Nose | 11.3 |
| Brain-1 | 14.1 |
| Eye | 10.5 |
| fetal fibroblast | 34.5 |
| venom gland-2 | 14.7 |
| Brain-2 | 22.1 |
| Spleen | 8.5 |
| Lung | 9.5 |
| Liver | 10.8 |
| Kidney | 7.8 |
| Pancreas | 8.1 |
| Small intestine | 7.2 |
| Large intestine | 8.9 |
| Stomach | 11.1 |
| heart | 11.2 |
| ovary | 11.8 |
| cheek muscle | 10.2 |
Transcript
| Transcript ID | habu1_s17097_g21883.t1 |
|---|---|
| Definition | - |
>habu1_s17097_g21883.t1 ggaatgaggcagcccgcgagcccagtctgaaataataaatggcgccttaaagagcaacgggactgagtcagatgtgacag tcggtgcgccccgccctgtcagagggtggagtcagcaacgaaaggaaatcaaagaaaacggacttgggccatacgagctt ctcctatttcccgcttccaaaaataataataataaaaaaacaaaaattggctgaagtcacgtggaaagggccggttggga agccacgtgatctgagtgccccccccctgaggttgggagtcgtcgcaatgggtaccacgctggacatcaagatcaagcgg gctaacaaggtgtatcactgcggggaagttctcactggagtggtggtcataacaagtaaagattcaatccagcatcaggg aatctcattaacaatggatggatctgtaaatctgcagctcagtgctaaaagtgttggtgtgtttgaagcattctgcaatt ctgttaagcctattcaactgattactaatacagtagaaatggtaaaatctggaaaactgcctagtggtaaaacagaaatt ccttttgagttcccactgcaagtaaaaggaggcaaaattctttatgaaacttaccatggagtttttgtcaatatccagta tactcttcgatgtgatatgcgacgttctctcctggccaaggatttgacaaaatcttgcgaatatattgtccattcaccac ctcagaaaggtaaaccaactccaagccctgtagactttactattactcctgaaacactacagaatgtgaaagagagagca ctgcttccaaaatttctcataagaggtcatctcaattcaacaaactgcatcataacacaacctctaacaggggagctgat agtggtgaactcagatgctgctgttaaaagcattgaactccagctggtacgagtggaaacctgtggctgtgctgaaggtt atgctagagatgccactgagattcagaacattcagattgctgatggcgatgtctgcagaaatcttcctattccaatctat atggtctttccaagattgtttacatgtcctacactggaaactacaaacttcaaagttgaatttgaagttaacatcgttgt cctcttgcatgatgatcacttaatcacagagaactttccactgaaactctgcagaatgtgattaggtttgctttacaact attgctcagactagatgcttcccacttgttggtcatccgactaactggcattgcaggcactaagtaccagtaatacaata aatgattgaccagaattttaagtt |
|
| Transcript ID | habu1_s17097_g21883.t2 |
| Definition | - |
>habu1_s17097_g21883.t2 aaccggtcgtaagtcgaggactttccctgctcgggagcgccgcgcatgcgtggttccaccccttgcaccggccgaggcgt agctggcaagcagcagagacggagcaggccgaccaccagctggcccagctcaagggaggaagttctcactggagtggtgg tcataacaagtaaagattcaatccagcatcagggaatctcattaacaatggatggatctgtaaatctgcagctcagtgct aaaagtgttggtgtgtttgaagcattctgcaattctgttaagcctattcaactgattactaatacagtagaaatggtaaa atctggaaaactgcctagtggtaaaacagaaattccttttgagttcccactgcaagtaaaaggaggcaaaattctttatg aaacttaccatggagtttttgtcaatatccagtatactcttcgatgtgatatgcgacgttctctcctggccaaggatttg acaaaatcttgcgaatatattgtccattcaccacctcagaaaggtaaaccaactccaagccctgtagactttactattac tcctgaaacactacagaatgtgaaagagagagcactgcttccaaaatttctcataagaggtcatctcaattcaacaaact gcatcataacacaacctctaacaggggagctgatagtggtgaactcagatgctgctgttaaaagcattgaactccagctg gtacgagtggaaacctgtggctgtgctgaaggttatgctagagatgccactgagattcagaacattcagattgctgatgg cgatgtctgcagaaatcttcctattccaatctatatggtctttccaagattgtttacatgtcctacactggaaactacaa acttcaaagttgaatttgaagttaacatcgttgtcctcttgcatgatgatcacttaatcacagagaactttccactgaaa ctctgcagaatgtgattaggtttgctttacaactattgctcagactagatgcttcccacttgttggtcatccgactaact ggcattgcaggcactaagtaccagtaatacaataaatgattgaccagaattttaagtt |
|
Protein
| Protein ID | habu1_s17097_g21883.t1 |
|---|---|
| Definition | - |
>habu1_s17097_g21883.t1 MGTTLDIKIKRANKVYHCGEVLTGVVVITSKDSIQHQGISLTMDGSVNLQLSAKSVGVFEAFCNSVKPIQLITNTVEMVK SGKLPSGKTEIPFEFPLQVKGGKILYETYHGVFVNIQYTLRCDMRRSLLAKDLTKSCEYIVHSPPQKGKPTPSPVDFTIT PETLQNVKERALLPKFLIRGHLNSTNCIITQPLTGELIVVNSDAAVKSIELQLVRVETCGCAEGYARDATEIQNIQIADG DVCRNLPIPIYMVFPRLFTCPTLETTNFKVEFEVNIVVLLHDDHLITENFPLKLCRM |
|
| Protein ID | habu1_s17097_g21883.t2 |
| Definition | - |
>habu1_s17097_g21883.t2 MRGSTPCTGRGVAGKQQRRSRPTTSWPSSREEVLTGVVVITSKDSIQHQGISLTMDGSVNLQLSAKSVGVFEAFCNSVKP IQLITNTVEMVKSGKLPSGKTEIPFEFPLQVKGGKILYETYHGVFVNIQYTLRCDMRRSLLAKDLTKSCEYIVHSPPQKG KPTPSPVDFTITPETLQNVKERALLPKFLIRGHLNSTNCIITQPLTGELIVVNSDAAVKSIELQLVRVETCGCAEGYARD ATEIQNIQIADGDVCRNLPIPIYMVFPRLFTCPTLETTNFKVEFEVNIVVLLHDDHLITENFPLKLCRM |
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