Gene
| Gene Model ID | habu1_s17_g00108 |
|---|---|
| Locus | habu1_scaffold17 : 27876 ... 51068 : + |
| To GenomeBrowser | habu1_scaffold17:27876..51068 |
| Genes list of scaffold | habu1_scaffold17 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| stromal membrane-associated protein 2 | GO:0044424 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s17_g00108.t1 | 1 | 1 | ArfGap | 10 | 103 | 1.3e-34 | 118.4 | 1.5e-38 | 2.3e-34 | 117.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s17_g00108.t1 | gi|602626784|ref|XP_007420345.1| | PREDICTED: stromal membrane-associated protein 2 [Python bivittatus] | 0.0 |
| habu1_s17_g00108.t1 | gi|327281695|ref|XP_003225582.1| | PREDICTED: stromal membrane-associated protein 2 [Anolis carolinensis] | 0.0 |
| habu1_s17_g00108.t1 | gi|641758818|ref|XP_008165354.1| | PREDICTED: stromal membrane-associated protein 2 [Chrysemys picta bellii] | 0.0 |
| habu1_s17_g00108.t1 | gi|697440916|ref|XP_009663845.1| | PREDICTED: stromal membrane-associated protein 2 [Struthio camelus australis] | 0.0 |
| habu1_s17_g00108.t1 | gi|558175272|ref|XP_006126003.1| | PREDICTED: stromal membrane-associated protein 2 isoform X1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 9.9 |
| Venom grand-1 | 5.4 |
| Pit, infrared sensing | 11.7 |
| Nose | 14.2 |
| Brain-1 | 15.1 |
| Eye | 9.1 |
| fetal fibroblast | 13.4 |
| venom gland-2 | 10.7 |
| Brain-2 | 15.4 |
| Spleen | 16.2 |
| Lung | 17.6 |
| Liver | 7.6 |
| Kidney | 8.1 |
| Pancreas | 12.9 |
| Small intestine | 10.1 |
| Large intestine | 14.5 |
| Stomach | 9.6 |
| heart | 5.9 |
| ovary | 34.6 |
| cheek muscle | 3.9 |
Transcript
| Transcript ID | habu1_s17_g00108.t1 |
|---|---|
| Definition | - |
>habu1_s17_g00108.t1 cgcaactaacaacaacaattgagcccaataaggtagttctgacccaactgagagagacagggagggagggatcattaagg ctttgatttgttaggttggtttatcagcgattccttggaatgaattatgaacataccggagcccatcaagccgggccaag atgggcctcgtggaacatcggtgtcttcatttgcatccgctgtgcgggaatacaccggaacctgggagttcatatctccc gagtaaaatccgtcaatctggaccaatggacacaagaacaaatacagtgcatgcaagaaatgggaaatgggaaagcgaat cgcctttacgagggctacctgcctgagaacttcagacgaccccagacagaccaagcagtggagagctttatcagagacaa atatgaaaagaagaagtacatggacagaagcctcgacgtcaacatgttacggagagaaaaggatgaaaaatggaagaagg aagcagctactgggaaaaaaatggagccagttgtctttgagaaagtcaaactgcctcagaagaaagaagaggctcaaatg acaaaacccctttccagaccctcagagccagtcatagacctgctggaactcgatgttcctgtttcagctgccctccccaa tggaagagccagcagttgtttggagaaagagttggacctatttggatccctgggcactgagagaaaggttgctggctcaa tgcccacatctggaagtgctggatctgttcctgaaaaactgaacctgttccctgagcctgacagccaggccgaggagaca gggaagaagcagctctccaaggactccatcctctctttatatggctcccatacgccacagatccctgcacaaggagccgt gttcctcgcgccaacccaaatgggctacccagccgcctatcccaatttcccaggcatggcaccaccgagtggcatgatgg caccatcagtgggggtgatggcgcagccaggagcggcagcaggcatgacagcacctatggcgatcccagcaggttatgta gggggcatgcagaccgcagtaattggggtccccaatgggatgatggcaacacagcaagctgggtacatgcctggcatggc acctgtcccaccaccagtgtatgttgtacaaccagctcaccaattacaatggaacctcgctcaggtgacgcagcaaatgg cagggatgaacttctgcggcacaaacggggtgatgcgctatggacagtcaatgggcagagggggtgccccaggaaccaat caagccctcagttcccaggtggccaaagtatttcagtttcagcttctggatctggccttctaaagagcagtcggggttga tctcttctaggactgaccggtttgaacgccttgtagtccaataataaactggcataatcatctatgaccg |
|
Protein
| Protein ID | habu1_s17_g00108.t1 |
|---|---|
| Definition | - |
>habu1_s17_g00108.t1 MNYEHTGAHQAGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEGYLPENFRR PQTDQAVESFIRDKYEKKKYMDRSLDVNMLRREKDEKWKKEAATGKKMEPVVFEKVKLPQKKEEAQMTKPLSRPSEPVID LLELDVPVSAALPNGRASSCLEKELDLFGSLGTERKVAGSMPTSGSAGSVPEKLNLFPEPDSQAEETGKKQLSKDSILSL YGSHTPQIPAQGAVFLAPTQMGYPAAYPNFPGMAPPSGMMAPSVGVMAQPGAAAGMTAPMAIPAGYVGGMQTAVIGVPNG MMATQQAGYMPGMAPVPPPVYVVQPAHQLQWNLAQVTQQMAGMNFCGTNGVMRYGQSMGRGGAPGTNQALSSQVAKVFQF QLLDLAF |
|