Gene
| Gene Model ID | habu1_s1827_g06782 |
|---|---|
| Locus | habu1_scaffold1827 : 1376718 ... 1412484 : - |
| To GenomeBrowser | habu1_scaffold1827:1376718..1412484 |
| Genes list of scaffold | habu1_scaffold1827 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pdz and lim domain protein partial | GO:0001725 GO:0001726 GO:0005634 GO:0005737 GO:0005925 GO:0008270 GO:0030036 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1827_g06782.t2 | 1 | 1 | PDZ | 72 | 142 | 9.3e-14 | 51.3 | 3.1e-17 | 1.5e-13 | 50.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1827_g06782.t2 | gi|641779220|ref|XP_008172491.1| | PREDICTED: PDZ and LIM domain protein 7 isoform X8 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.5 |
| Venom grand-1 | 2.8 |
| Pit, infrared sensing | 2.1 |
| Nose | 1.5 |
| Brain-1 | 2.6 |
| Eye | 4.3 |
| fetal fibroblast | 5.9 |
| venom gland-2 | 0.6 |
| Brain-2 | 2.7 |
| Spleen | 0.4 |
| Lung | 3.9 |
| Liver | 0.5 |
| Kidney | 1.7 |
| Pancreas | 0.7 |
| Small intestine | 1.0 |
| Large intestine | 4.0 |
| Stomach | 5.0 |
| heart | 7.3 |
| ovary | 3.7 |
| cheek muscle | 16.0 |
Transcript
| Transcript ID | habu1_s1827_g06782.t1 |
|---|---|
| Definition | - |
>habu1_s1827_g06782.t1 gactttggaatgctctaccaaagtcttaattctatctgggccatttcccagactgccagagatcagcataagctactcta ctcagggagaggatcagatggactgtggaaacaatcccccgaatttgaaatccttcccttttgagtttgctttttttgca tttagaaaggttttcaagacccggctagccgaatgacagccctgggcgccccacctctccaccaaacgggatcgcctttc ctgcttatccagtcccgcttgaagtcgccggcggcgcccacgccgcaccctccccggcgacatcacccccagcagcgact ccagggggagccttcaggccgaggaggggcttcccaccgccgcgcatgcgctcctagcaaacggcgctcaaggggcttgg ctgaatgactgccccgcgcgggccctgcagatatgagtgacatggattcatacaagattcttctggatgggccagcacca tgggggttcagactgcagggtggcaaggacttcaatatgccactctccatttccagactcacccccgggggcaaggcagc ccaggcaggggctggagttggggactgggtgctcagcattgatggacagagcaccagcaccatgacccacattgaagccc agaacaagatccgtgcctgtggggacaaactctctctcagcttaagcaaagtccagaatctcctaggcaaacctcagaag gacgcactcccttcttctcagctccccaaatataacttcactcccagttctgccctcaacaagacagcacggccctttgg agttaaccctgctccaagcactcagcccgtgcgggcgacgaaacccgtgcagtatgtccctcctgcatccgtctgcacca cacagcacaatggggtaaatgcaggtggatgcaggatggatggggattaattcggtaaaattaataaacttcggaaaagg agaggggaaaagaatatgcttggaatcagcaacgttggcctgctttttctgccaggatgagctgctaaagtgtggaagac aaccctaagtgcttaactgcatgcaagttgttggcaattcagaggttgctgaaaataaagatgctttaggtgagctcttc t |
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| Transcript ID | habu1_s1827_g06782.t2 |
| Definition | - |
>habu1_s1827_g06782.t2 gccctcgtggcgcctgctgccatgggcacgatcttagctcctggatgttaccggctttcccggcttcctttgccggatcg gaacgcccgttttctgggagtgagcggggctgcaatcgacggcaggctcgcctctcaatcggggaagggatcgggctttg ggtcctgctgtggccgaaggagaaagtggcttcaggggcttttcgtgaagggaggaaacatatgagtgacatggattcat acaagattcttctggatgggccagcaccatgggggttcagactgcagggtggcaaggacttcaatatgccactctccatt tccagactcacccccgggggcaaggcagcccaggcaggggctggagttggggactgggtgctcagcattgatggacagag caccagcaccatgacccacattgaagcccagaacaagatccgtgcctgtggggacaaactctctctcagcttaagcaaag tccagaatctcctaggcaaacctcagaaggacgcactcccttcttctcagctccccaaatataacttcactcccagttct gccctcaacaagacagcacggccctttggagttaaccctgctccaagcactcagcccgtgcgggcgacgaaacccgtgca gtatgtccctcctgcatccgtctgcaccacacagcacaatggggtaaatgcaggtggatgcaggatggatggggattaat tcggtaaaattaataaacttcggaaaaggagaggggaaaagaatatgcttggaatcagcaacgttggcctgctttttctg ccaggatgagctgctaaagtgtggaagacaaccctaagtgcttaactgcatgcaagttgttggcaattcagaggttgctg aaaataaagatgctttaggtgagctcttct |
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Protein
| Protein ID | habu1_s1827_g06782.t1 |
|---|---|
| Definition | - |
>habu1_s1827_g06782.t1 MTALGAPPLHQTGSPFLLIQSRLKSPAAPTPHPPRRHHPQQRLQGEPSGRGGASHRRACAPSKRRSRGLAEXLPRAGPAD MSDMDSYKILLDGPAPWGFRLQGGKDFNMPLSISRLTPGGKAAQAGAGVGDWVLSIDGQSTSTMTHIEAQNKIRACGDKL SLSLSKVQNLLGKPQKDALPSSQLPKYNFTPSSALNKTARPFGVNPAPSTQPVRATKPVQYVPPASVCTTQHNGVNAGGC RMDGD |
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| Protein ID | habu1_s1827_g06782.t2 |
| Definition | - |
>habu1_s1827_g06782.t2 MLPAFPASFAGSERPFSGSERGCNRRQARLSIGEGIGLWVLLWPKEKVASGAFREGRKHMSDMDSYKILLDGPAPWGFRL QGGKDFNMPLSISRLTPGGKAAQAGAGVGDWVLSIDGQSTSTMTHIEAQNKIRACGDKLSLSLSKVQNLLGKPQKDALPS SQLPKYNFTPSSALNKTARPFGVNPAPSTQPVRATKPVQYVPPASVCTTQHNGVNAGGCRMDGD |
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