Gene
| Gene Model ID | habu1_s1864_g06897 |
|---|---|
| Locus | habu1_scaffold1864 : 334666 ... 351437 : + |
| To GenomeBrowser | habu1_scaffold1864:334666..351437 |
| Genes list of scaffold | habu1_scaffold1864 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| interferon regulatory factor 6 | GO:0000975 GO:0003700 GO:0005667 GO:0005737 GO:0007050 GO:0008285 GO:0030216 GO:0043616 GO:0045449 GO:0045893 GO:0048468 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1864_g06897.t1 | 1 | 1 | IRF | 39 | 147 | 0.0 | 161.4 | 0.0 | 0.0 | 160.4 |
| habu1_s1864_g06897.t1 | 1 | 1 | IRF-3 | 253 | 437 | 0.0 | 218.8 | 0.0 | 0.0 | 218.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1864_g06897.t1 | gi|705672874|ref|XP_010115734.1| | PREDICTED: interferon regulatory factor 6 [Chlamydotis macqueenii] | 0.0 |
| habu1_s1864_g06897.t1 | gi|602637473|ref|XP_007425582.1| | PREDICTED: interferon regulatory factor 6-like [Python bivittatus] | 0.0 |
| habu1_s1864_g06897.t1 | gi|637296283|ref|XP_008108030.1| | PREDICTED: interferon regulatory factor 6 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s1864_g06897.t1 | gi|327271411|ref|XP_003220481.1| | PREDICTED: interferon regulatory factor 6 isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s1864_g06897.t1 | gi|558142586|ref|XP_006118826.1| | PREDICTED: interferon regulatory factor 6 isoform X1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 10.2 |
| Venom grand-1 | 5.1 |
| Pit, infrared sensing | 12.0 |
| Nose | 11.0 |
| Brain-1 | 0.1 |
| Eye | 6.7 |
| fetal fibroblast | 0.2 |
| venom gland-2 | 12.1 |
| Brain-2 | 0.0 |
| Spleen | 1.7 |
| Lung | 8.4 |
| Liver | 2.4 |
| Kidney | 7.6 |
| Pancreas | 5.0 |
| Small intestine | 16.9 |
| Large intestine | 9.4 |
| Stomach | 10.0 |
| heart | 0.2 |
| ovary | 5.9 |
| cheek muscle | 0.3 |
Transcript
| Transcript ID | habu1_s1864_g06897.t1 |
|---|---|
| Definition | - |
>habu1_s1864_g06897.t1 aagtcgaggactaaactggtcataagtcgaggactatccaaccggtcgtaagtcgaggactttccctgcccgggagcacc gcgcatgcgtggttcctccccctgcgccagccgaggcgtagctggcaagcggcagagatggagcaggccgaccaccagct ggcccagcccaagggagataatggcatcacatccacgcagagttcgactgaaaccctggctagtagctcaagtagacagt ggaatgtatccaggtcttctttggcttaacagggatgcaaagcgatttcaaattccttggaagcatgcaactcgacatag tcctcagcatgaagaagaaaataccatttttaaggcgtgggctgtggaaacaggaaagtatcaagaaggggttgatgatc ctgatcccgcaaaatggaaagcccaactccgctgtgctctcaacaaaagccgtgaattcaagctcatatacgatggcacc aaagaagtaccaatgaatccaattaaaatttatgaagtatgtgacatcccaccatccctgacgccaatcattaatcctgg ttccaccggttcagttccatgggatgaaaaggataatgatgtagatgatgaagatgaagatgaattaaatgagtctcaaa acgtagcaatacaggacagttttccatttcttaatatcaatgattctccaatggctcctgctagtgcagagacctgtagc cctgaagctgtgtggccaaagaatgagcctgaagatgtggagatgccaatgcctcctgcgctgccagctctacagcatga tatgtacagctctcctgaactttggattagttctcttcctatgacagatctcgaaatcaaatttgaatatcgaggcaagg agtttgggcagacaatgactgtgagcaacccccaaggctgcagacttttctatggagaattaggtcctatgccagatcaa gaagaactctttgggcctattaatttggagcaagtcaagtttccagggcccgaacccatcacgaatgaaaagcaaaagct gttcaccagtcgactgcttgatgtaatggacagagggttaatactagaagtcagtggtcatgctatctatgctatcaggc tttgccagtgcaaagtatattggtctgggccatgtgcaccttcctctaccacaccaaacttaattgaaagacagaagaga gttaaggtcttttgtttggaaacatttctaagtgagttaattgcccatcagaaaggacagattagtaaacagccaccata tgagatctacttttgttttggagaggaatggccagatggaaaatcaaaagagcgaaagctgattgttgttcaggtaattc cagttgtagcccggatgatctatgaaatgttctctggtgacttcacccgctcctttgacagtggcagtgtgcgtctacag atctctattccggatatcaaggataacattgttgcccagctaaaacaactctaccgtctgctgcagaatcaccaagaagg ctggccagtgcaaccaccaaatatgcagatgaccccacccctcacagcacagtgatgacccagtcttggatagccaagca gttgtctggattcttcagttctagactgaaattaattgaaataaaaacacttttaaatatttcttca |
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Protein
| Protein ID | habu1_s1864_g06897.t1 |
|---|---|
| Definition | - |
>habu1_s1864_g06897.t1 MRGSSPCASRGVAGKRQRWSRPTTSWPSPREIMASHPRRVRLKPWLVAQVDSGMYPGLLWLNRDAKRFQIPWKHATRHSP QHEEENTIFKAWAVETGKYQEGVDDPDPAKWKAQLRCALNKSREFKLIYDGTKEVPMNPIKIYEVCDIPPSLTPIINPGS TGSVPWDEKDNDVDDEDEDELNESQNVAIQDSFPFLNINDSPMAPASAETCSPEAVWPKNEPEDVEMPMPPALPALQHDM YSSPELWISSLPMTDLEIKFEYRGKEFGQTMTVSNPQGCRLFYGELGPMPDQEELFGPINLEQVKFPGPEPITNEKQKLF TSRLLDVMDRGLILEVSGHAIYAIRLCQCKVYWSGPCAPSSTTPNLIERQKRVKVFCLETFLSELIAHQKGQISKQPPYE IYFCFGEEWPDGKSKERKLIVVQVIPVVARMIYEMFSGDFTRSFDSGSVRLQISIPDIKDNIVAQLKQLYRLLQNHQEGW PVQPPNMQMTPPLTAQ |
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