Gene
| Gene Model ID | habu1_s1864_g06901 |
|---|---|
| Locus | habu1_scaffold1864 : 451036 ... 481955 : + |
| To GenomeBrowser | habu1_scaffold1864:451036..481955 |
| Genes list of scaffold | habu1_scaffold1864 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| laminin subunit beta-3 | GO:0005610 GO:0035987 GO:0050873 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1864_g06901.t1 | 1 | 1 | Laminin_N | 24 | 246 | 2.10055e-42 | 144.7 | 0.0 | 2.10055e-42 | 144.7 |
| habu1_s1864_g06901.t1 | 2 | 1 | Laminin_EGF | 248 | 309 | 2.4e-13 | 49.7 | 1.2e-10 | 4.3e-07 | 29.7 |
| habu1_s1864_g06901.t1 | 2 | 2 | Laminin_EGF | 333 | 383 | 2.4e-13 | 49.7 | 5.7e-12 | 2.1e-08 | 33.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1864_g06901.t1 | gi|637296233|ref|XP_008108022.1| | PREDICTED: laminin subunit beta-3 [Anolis carolinensis] | 0.0 |
| habu1_s1864_g06901.t1 | gi|602675813|ref|XP_007443382.1| | PREDICTED: laminin subunit beta-3-like, partial [Python bivittatus] | 0.0 |
| habu1_s1864_g06901.t1 | gi|557298159|ref|XP_006031370.1| | PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-3 [Alligator sinensis] | 0.0 |
| habu1_s1864_g06901.t1 | gi|558142546|ref|XP_006118817.1| | PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-3 [Pelodiscus sinensis] | 0.0 |
| habu1_s1864_g06901.t1 | gi|564269836|ref|XP_006273686.1| | PREDICTED: laminin subunit beta-3 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.0 |
| Venom grand-1 | 1.4 |
| Pit, infrared sensing | 2.1 |
| Nose | 1.4 |
| Brain-1 | 1.0 |
| Eye | 1.7 |
| fetal fibroblast | 0.4 |
| venom gland-2 | 1.4 |
| Brain-2 | 1.2 |
| Spleen | 0.6 |
| Lung | 9.8 |
| Liver | 2.2 |
| Kidney | 1.3 |
| Pancreas | 1.5 |
| Small intestine | 4.1 |
| Large intestine | 0.7 |
| Stomach | 3.3 |
| heart | 0.8 |
| ovary | 1.0 |
| cheek muscle | 0.7 |
Transcript
| Transcript ID | habu1_s1864_g06901.t1 |
|---|---|
| Definition | - |
>habu1_s1864_g06901.t1 agttaaagaagccaggcaagggattccagctgacccctgcacaaaagagaaggaaaaagacaggatagtgcaggtaactc ttgaatgttgtgaagctcatcattatgtggatattccttcttctggtctctccatacctcctggttgcacaaagaacctg tctgcatggggcctgctacccacatgcacaggatcttcttataggaagaatccattatttgaaggcctcctccacctgtg gacttacccaacctgaaacttcctgtactccatatggagaatggcaaatgaaatgttgccgatgtgattccagaatccct catgcattcaacagtcaccgggtggaaaatgttctctcttctacaggacacaagcggtggtggcaatctcagaatgatgt gaaacatgtttctctccaactggatttaaacaataaatttcagcttgctaatctcctgctggacttcaggagtcctttgc caggtggcatggtgattgagcgttctactgattttggtacaacgtggaagatctatcagtacttgtccacagactgttct actacttttccctggatccccaagagcttgcctcagaaatggaatgatgtccgttgccaggacatacagagtcaacatag acaacctcagaatgggggaaagattaagttcaaccctgtagaccttctatcagggctgatgacatctcaaagccaacgga ttaacaatctggctgaattcaccaatctgagaatcaacttcacacagttgactcgctttccacatcaggggtaccgctta cccagtgctttctatgccttaaatgagatgcaggtgcaagggagctgtttttgtcatgggcatgcagaccactgtgctgc tcctgatgcctcttctggagaccctagggctatggttcatgggaattgtgtatgccaacacaatactgctgggccaaact gtgatcactgtgcatctttttatagtgaccagccatggagacctgcagaagatgataatcctaatgaatgtcgtagtatg tatgcctatctgatttcccaagaaaatgtttatttaataaagctttcaaaaaatataggatgcaattgtaatggacattc ccacaaatgtcattttgacctaagtatataccaagcaaatgggggaaagaatgggggtgtatgtgaagattgccagcaca acacagcagggaggaactgtgaactttgcaaaataaacttttttcgtaatcgacgctttgatcttggccatccagagctt gtgagtgtgatccagatggcactgttcctgattctagctgtgaccgcacgaatggtcattgcgtctgtaaggaaaatgtg caaggagatcgttgtcatctttgcaaacctggctttactcagttgaccaactctaacccccaaggttgccatgttatttt tagctcattggccagtttagaaagttaaaatgtgtggcattagaaaattaagttttgcttatgagattgtgtgtactccc ttaatgagtttggaattatatgataaatatagaatgtgctatggatactgaagcccaggatcactttagtacaagaaaag gtaacccattttttttcacatagcctgtcccagtgattaaattggaactttacactaaatcaa |
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Protein
| Protein ID | habu1_s1864_g06901.t1 |
|---|---|
| Definition | - |
>habu1_s1864_g06901.t1 MWIFLLLVSPYLLVAQRTCLHGACYPHAQDLLIGRIHYLKASSTCGLTQPETSCTPYGEWQMKCCRCDSRIPHAFNSHRV ENVLSSTGHKRWWQSQNDVKHVSLQLDLNNKFQLANLLLDFRSPLPGGMVIERSTDFGTTWKIYQYLSTDCSTTFPWIPK SLPQKWNDVRCQDIQSQHRQPQNGGKIKFNPVDLLSGLMTSQSQRINNLAEFTNLRINFTQLTRFPHQGYRLPSAFYALN EMQVQGSCFCHGHADHCAAPDASSGDPRAMVHGNCVCQHNTAGPNCDHCASFYSDQPWRPAEDDNPNECRSMYAYLISQE NVYLIKLSKNIGCNCNGHSHKCHFDLSIYQANGGKNGGVCEDCQHNTAGRNCELCKINFFRNRRFDLGHPELVSVIQMAL FLILAVTARMVIASVRKMCKEIVVIFANLALLS |
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