Gene
| Gene Model ID | habu1_s188_g01044 |
|---|---|
| Locus | habu1_scaffold188 : 67129 ... 99195 : - |
| To GenomeBrowser | habu1_scaffold188:67129..99195 |
| Genes list of scaffold | habu1_scaffold188 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| coronin- partial | GO:0016020 GO:0030036 GO:0051015 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s188_g01044.t1 | 1 | 1 | DUF1899 | 11 | 74 | 3.4e-29 | 100.2 | 1.3e-32 | 6.2e-29 | 99.4 |
| habu1_s188_g01044.t1 | 3 | 1 | WD40 | 84 | 116 | 4.3e-22 | 77.1 | 1.8e-11 | 9.0e-08 | 31.7 |
| habu1_s188_g01044.t1 | 3 | 2 | WD40 | 130 | 166 | 4.3e-22 | 77.1 | 6.9e-08 | 0.00034 | 20.3 |
| habu1_s188_g01044.t1 | 3 | 3 | WD40 | 170 | 206 | 4.3e-22 | 77.1 | 5.4e-08 | 0.00027 | 20.7 |
| habu1_s188_g01044.t1 | 1 | 1 | DUF1900 | 261 | 397 | 0.0 | 176.1 | 0.0 | 0.0 | 174.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s188_g01044.t1 | gi|602663554|ref|XP_007437407.1| | PREDICTED: coronin-2B [Python bivittatus] | 0.0 |
| habu1_s188_g01044.t1 | gi|530622318|ref|XP_005300770.1| | PREDICTED: coronin-2B isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s188_g01044.t1 | gi|530622316|ref|XP_005300769.1| | PREDICTED: coronin-2B isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s188_g01044.t1 | gi|564241341|ref|XP_006277488.1| | PREDICTED: coronin-2B [Alligator mississippiensis] | 0.0 |
| habu1_s188_g01044.t1 | gi|674056241|ref|XP_008834593.1| | PREDICTED: coronin-2B isoform X1 [Nannospalax galili] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.4 |
| Venom grand-1 | 13.0 |
| Pit, infrared sensing | 4.2 |
| Nose | 5.4 |
| Brain-1 | 35.2 |
| Eye | 12.8 |
| fetal fibroblast | 13.4 |
| venom gland-2 | 8.3 |
| Brain-2 | 40.8 |
| Spleen | 1.3 |
| Lung | 3.8 |
| Liver | 0.0 |
| Kidney | 0.4 |
| Pancreas | 0.2 |
| Small intestine | 0.3 |
| Large intestine | 1.3 |
| Stomach | 0.5 |
| heart | 2.4 |
| ovary | 13.9 |
| cheek muscle | 108.6 |
Transcript
| Transcript ID | habu1_s188_g01044.t1 |
|---|---|
| Definition | - |
>habu1_s188_g01044.t1 gagcccggcttcccccgccggccttcgcgagggtcgcccgtttggccgagagaagtttctgcatgacggtctccaagatg tcatggcggccacaatatcgcagttccaagtttcgaaatgtctatggcaaagtagccaatcgagagcactgctttgatgg gattccaattaccaggaatgtccatgacaaccatttctgcgcagtcaataccagattcatcgccatagtaacagaaagtg ctggtgggggctcttttcttgtcattccactggaacaaactggccgaattgaaccaaactaccccaaagtctgtggccac caaggcaacgtgcttgatattaagtggaatcccttcattgaaaacatcattgcttcttgctccgaagacacttcagttcg gatatgggaaatcccggacggaggcttgaagcgcaacatgacagaggctgtgctggagctgtatggccacagccggcgtg ttggcctcatcgagtggcacccaaccaccaccaacatcctgttcagtgctggatatgactataagatcctcatctggaac ttagatattggtgaaccggtgaagatgattgactgccactctgacgtcatcctttgcatgtccttcaacacaaatggcag tttactctccaccacttgcaaagacaggaagctacgggtcattgagccacgttcaggcaaagtcctccaggaggcaaact gcaagaatcaccgtgtgaaccgtgtggtcttcttagggaacatcaagaggcttctaacaactggtgtgtcacgctggaac accaggcagattgctctctgggatcaggaagatctatccatgccactgatagaggaagagattgatggattatcaggcct tctcttcccattctatgatgctgacacccacatgttgtacctggctggcaagggagacgggaatatccgctactacgaaa tcaacacggagaagccatacctgacctacctgatggagttccgttctccagccccacagaaaggccttggagtaatgccg aagcacggcctggatgtatctgcatgtgaggtgtttcgattttacaagctcgtcacactgaaaggattaattgagccaat ctctatgattgtaccaaggagatctgaaacataccaggaagatatctacccaatgactccgggtccggaacctgccctcg ccccagacgagtggctgagtggaatgaatagggatcccatattgatgtctttaaaggaaggctataagaaagagtccaaa gtagtttttaaaccaccaataagagcgaagaagagcattgttgttaatgggatagatctcttggaaaatgtgcctcccag aacagagaacgagctcctcagaatgttcttccggcaacaagacgagatccgtcgactgaaggttgagctttcgcagaaag acatcaaaatccgacagctacagttggaattgaaaaacttgcgcaatagcccccaaaacaatggactctgaaggattttg tttaacacaaactctttgtttatacccactctttaattttactgtatcaacttaacacgtgatatgagccagagaccctg tgccagcacacgggtacacctgctaactggaagcctgttctcctgtggtcattgcctagcactaaaaagttatttgtatg atttaacttgagaactactgcatgaaaaggcaagggacgtatatattccaaattcctcttgaagtaagtaggagtgtact gctatttgtcgttctctcaaaattacaaaatcatttttcattcctgattattccagggatgaaaaaacaaaatactgtaa gctcagatgaaagcaactgaattcattattacttacctttgttttcctgagtaaagtatggctgataaacagtgagt |
|
Protein
| Protein ID | habu1_s188_g01044.t1 |
|---|---|
| Definition | - |
>habu1_s188_g01044.t1 MTVSKMSWRPQYRSSKFRNVYGKVANREHCFDGIPITRNVHDNHFCAVNTRFIAIVTESAGGGSFLVIPLEQTGRIEPNY PKVCGHQGNVLDIKWNPFIENIIASCSEDTSVRIWEIPDGGLKRNMTEAVLELYGHSRRVGLIEWHPTTTNILFSAGYDY KILIWNLDIGEPVKMIDCHSDVILCMSFNTNGSLLSTTCKDRKLRVIEPRSGKVLQEANCKNHRVNRVVFLGNIKRLLTT GVSRWNTRQIALWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEINTEKPYLTYLMEFRSPAPQK GLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSETYQEDIYPMTPGPEPALAPDEWLSGMNRDPILMSLKEG YKKESKVVFKPPIRAKKSIVVNGIDLLENVPPRTENELLRMFFRQQDEIRRLKVELSQKDIKIRQLQLELKNLRNSPQNN GL |
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