Gene
| Gene Model ID | habu1_s188_g01045 |
|---|---|
| Locus | habu1_scaffold188 : 99476 ... 169438 : + |
| To GenomeBrowser | habu1_scaffold188:99476..169438 |
| Genes list of scaffold | habu1_scaffold188 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrin alpha-11 | GO:0007155 GO:0007229 GO:0008305 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s188_g01045.t1 | 1 | 1 | VWA | 220 | 400 | 5.9e-40 | 136.8 | 5.19882e-43 | 1.1e-39 | 135.9 |
| habu1_s188_g01045.t1 | 1 | 1 | VWA_2 | 220 | 400 | 2.0e-12 | 47.5 | 1.7e-15 | 3.6e-12 | 46.7 |
| habu1_s188_g01045.t1 | 2 | 1 | FG-GAP | 536 | 574 | 2.3e-14 | 52.5 | 2.4e-07 | 0.00051 | 19.6 |
| habu1_s188_g01045.t1 | 1 | 1 | VCBS | 544 | 618 | 8.3e-07 | 29.2 | 1.3e-07 | 0.00027 | 21.2 |
| habu1_s188_g01045.t1 | 2 | 2 | FG-GAP | 603 | 633 | 2.3e-14 | 52.5 | 3.0e-07 | 0.00064 | 19.3 |
| habu1_s188_g01045.t1 | 1 | 1 | Integrin_alpha2 | 691 | 1094 | 0.0 | 285.7 | 0.0 | 0.0 | 284.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s188_g01045.t1 | gi|602662631|ref|XP_007436958.1| | PREDICTED: integrin alpha-11, partial [Python bivittatus] | 0.0 |
| habu1_s188_g01045.t1 | gi|641768386|ref|XP_008168734.1| | PREDICTED: integrin alpha-11 [Chrysemys picta bellii] | 0.0 |
| habu1_s188_g01045.t1 | gi|591369463|ref|XP_007059564.1| | PREDICTED: integrin alpha-11 [Chelonia mydas] | 0.0 |
| habu1_s188_g01045.t1 | gi|557324900|ref|XP_006035475.1| | PREDICTED: integrin alpha-11 [Alligator sinensis] | 0.0 |
| habu1_s188_g01045.t1 | gi|700428990|ref|XP_009953156.1| | PREDICTED: integrin alpha-11 [Leptosomus discolor] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.2 |
| Venom grand-1 | 0.2 |
| Pit, infrared sensing | 1.5 |
| Nose | 0.1 |
| Brain-1 | 0.4 |
| Eye | 1.1 |
| fetal fibroblast | 11.5 |
| venom gland-2 | 0.6 |
| Brain-2 | 0.2 |
| Spleen | 0.3 |
| Lung | 0.3 |
| Liver | 0.1 |
| Kidney | 0.1 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.3 |
| Stomach | 0.2 |
| heart | 0.1 |
| ovary | 2.4 |
| cheek muscle | 0.9 |
Transcript
| Transcript ID | habu1_s188_g01045.t1 |
|---|---|
| Definition | - |
>habu1_s188_g01045.t1 gccagcgccgcctcctgccgccgccttgggggatcctcgactgatgaccacaatggagtccaaaacttctgggcactaca catcaagaaggattcaaagaaaatttgcatgttcagagaaggacaatgatcaagagactagaaatgaaatccgaagcaga cagtgcagcagccaaacagccctggacgtctctgggtgccccatggaggcctgccgaggggtgctggtggcctgggctgt tagcctcctgacaggatgctgtcacaccttcaacatcgatacaaagagggcaagaattatcccaggctccagagaagcat acttcggctacacagttcaacagcatgaaatcaatgggaagaaatggctagtggtaggagctccatatgagatcaatggg ccccagaaaacaggagatgtctacaagtgttcagtgaacagcaaggccaacagcacatgttccaagctcaatctaggaag agtaactctttccaatgtgtcggaacgaaaggataacatgcgcctgggtctcagcctaactaccaaccccaaagacaaca gctttttggcttgcagccctctgtggtctcatgagtgcggaagttcctattacaccacaggcatgtgctccagagtgaac tccaacttcagatactccaagtcagtggctccagctctccagagatgccagacatacatggatataattatagtcctgga tggatctaacagcatctacccctgggcagaagttcaaaatttcctgataagaatcttgaagaaattttacattggaccgg gacaaatacaggttggagttgtccaatatggagaggatgctgtccatgaatttcacctgaatgattatagatctgtaaag gatgtggtagaagctgccaaacacatcgagcagagaggaggtactgaaacccgaacagcctttggaatagagtttgctcg ctcagaagcatttcagaaaggagggcggaagggtgcaaagaaggttatgattgttatcactgatggagagtctcacgaca gcccagatcttgagaaggcaattgaaggcagcgagaaagacaatgtcaccagatacgccgttgcagtccttggttattac aacagaagagggatcaaccctgcagcctttttgaaagaaatcaaatatatagcgagtgacccagacgaaaaacatttctt taatgtcagtgatgaggctgcccttaaagatattgtggatgctcttggagagaggattttcagcttagaaggcaccaaca aaaatgaaatatcctttggcctggaaatgtcccagactggattttcatcccatattgtggaagatgggattctgcttgga gccgtgggggcctatgactggaatggtgccgtcctcaaggagaccagcagtggcaaagttgttcctcaccgagaatccta ccttcaagagtttccagatgaactgaaaaatcatggggcctatcttggctacactgtcacctcggtggtgtccaccagac tcagcaggatttacgtagcaggagcccctcgattcaaccatactggaaaagtgattgttttcacaatgcacacaaatcga agcctcaccatccaccagtcactgaccggagagcagatcggtgcctactttggaagtgaaatcagttcaatagatgttga tgggaacggaatcacagacattctgttggtcggggctcccatgtatttcagtgaagggcgagagaggggaaaggtctaca tctacagcttaaaagagaaccagtttgttcccaatggagccttgaaggacttgcctggctatcagaattccaggttcggg tcctgcattgccactgtagctgacttgaaccaggattcctacagcgatgtagttgtaggagcacctctggaggatgagca tcagggagctctgtacatcttccatggttatcgggaaaatctgatccggagatataagcagagaattgctgctgctgatc tttctcctggctttatgtattttgggagcagcatccacggaagcctggatatgaatgaagacaagctggtggatcttgct gtgggctcccgtggaagtgctgtcctattatggtcccgcagtgtggtccaaatcaatgccaccctccagtttgagccttc caaaatcaacatcttcaccaaggactgtgttcggaatggaaaagaggccacttgtctgtcaacctttgtttgcctgactg cagtttttctctcagctcattttcagacagctcatgtagcattggattacaacctcaccattgatgaacgacgatatatc ccacgagcccacctggatgaaaatggagatcgacttgcccacaagacagtcaccctgcttgccgggcaggaacattgtga caagatggattttcatgtcttggatacagctgattatgtgaagccagtgactttctctgtcgattatgccctaaatagtc ctgagactggaccagtgatggatgatgggtggccaacttcactgaaagttgctgtaccattctggaacggatgcaacgaa gatgagcactgcatccctaatttggttctcgatgctaaaacagatgtccccactgcaatggaatattgcagacgggtcct gagaaaatctcactcggattgctccgcctacacgctgtcttttgatacctccatttttgtcatagagagtgccagaagga gggtagcagtagaagccctgctggagaacagaggagaaaatgcatataacaccattctaaacatttccttctcaagaaac ctgcaatttgcaagcttgattaagaaggatgacccagacattaatatagaatgcatgtttgaggagaaacattcaaacag cagagtttgcaatgtcagctaccccttcttccgggccaaagcaaaggttgcttttcgcttggattttgagttcaaaaagt caattttcctccaaaacctggagatatttttgaatgccagcagtgacagtgaagaacaagaaagcacgaaagaggacaat tctgctctcctcaagtttcagctgaaatatgaaactgatctccttttcaccaggggttccagccagaactattatgagat caaacccaacaattctctacagacatacgatagaatcggcccaccatttaattgcacttttaagctacaaaatctgggcc tcttccctgtagatgggatagttatcaaaatcaccgtcccagtggccacacgaggagggaatcgccttctgcagctaaca ggcttccatggaccagagaatggtatgatgtgcaatattggaggcaatgacacagactatcgaaggacaccctcggatga ggatttaggccgtcatccccagctgaattacagtaattctgatgtgatttcaatcgactgcagtgtgaatctggctgcca atgaagaagtcagctttctcttatatggaaatttgtggatgaggaccctaagagtgctgaaattcaagaccttgagattc atcttcaatgctgccttgcagagagggtttcgtagtgcctttgtcttcagagaagaggatcctagtcgccagattgcatt tgagatctccaaggtcgaggagtcccacatccccatctggattataattgggagcacgttaggtggtttcctgctgctgg cactgctagtgctggccctctggaagcttggtttttttcaaagcgctacccacaagagagatgcaagccaggatcagact accaaagatttggactaaggcttccgttgtcctgagcataccagctggtcttttttctcacaaacaagtttactttgctg tatagccagcttccttttgcattgaccagtttcccagttacctgaaagccacccagctgctaagtgttaccctgcaaagg agaggcctccactagcaaggacttcaaactggttttgtttccttctgcctaagacactggaactatacaataaggacagg gagagagtagatccacaaggagcagctttctctttaaaatgatctactttggccacaagactgagggaaaagatgccaga agactcccatcctttactgcacgcgcaagattgtttggaatgaaacgcttttcagtctgcactttcattggggaaacttt gctcctgaaataaaaaggagtggaaagtctagattcacacaaatacttgagctttcactttccttcattcaagctgtcaa ggacaaaccggtcaggcatctgcagtgcacttccctaaaaacaaatcaagttgctataataaaatgttttattccagatt actta |
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Protein
| Protein ID | habu1_s188_g01045.t1 |
|---|---|
| Definition | - |
>habu1_s188_g01045.t1 MTTMESKTSGHYTSRRIQRKFACSEKDNDQETRNEIRSRQCSSQTALDVSGCPMEACRGVLVAWAVSLLTGCCHTFNIDT KRARIIPGSREAYFGYTVQQHEINGKKWLVVGAPYEINGPQKTGDVYKCSVNSKANSTCSKLNLGRVTLSNVSERKDNMR LGLSLTTNPKDNSFLACSPLWSHECGSSYYTTGMCSRVNSNFRYSKSVAPALQRCQTYMDIIIVLDGSNSIYPWAEVQNF LIRILKKFYIGPGQIQVGVVQYGEDAVHEFHLNDYRSVKDVVEAAKHIEQRGGTETRTAFGIEFARSEAFQKGGRKGAKK VMIVITDGESHDSPDLEKAIEGSEKDNVTRYAVAVLGYYNRRGINPAAFLKEIKYIASDPDEKHFFNVSDEAALKDIVDA LGERIFSLEGTNKNEISFGLEMSQTGFSSHIVEDGILLGAVGAYDWNGAVLKETSSGKVVPHRESYLQEFPDELKNHGAY LGYTVTSVVSTRLSRIYVAGAPRFNHTGKVIVFTMHTNRSLTIHQSLTGEQIGAYFGSEISSIDVDGNGITDILLVGAPM YFSEGRERGKVYIYSLKENQFVPNGALKDLPGYQNSRFGSCIATVADLNQDSYSDVVVGAPLEDEHQGALYIFHGYRENL IRRYKQRIAAADLSPGFMYFGSSIHGSLDMNEDKLVDLAVGSRGSAVLLWSRSVVQINATLQFEPSKINIFTKDCVRNGK EATCLSTFVCLTAVFLSAHFQTAHVALDYNLTIDERRYIPRAHLDENGDRLAHKTVTLLAGQEHCDKMDFHVLDTADYVK PVTFSVDYALNSPETGPVMDDGWPTSLKVAVPFWNGCNEDEHCIPNLVLDAKTDVPTAMEYCRRVLRKSHSDCSAYTLSF DTSIFVIESARRRVAVEALLENRGENAYNTILNISFSRNLQFASLIKKDDPDINIECMFEEKHSNSRVCNVSYPFFRAKA KVAFRLDFEFKKSIFLQNLEIFLNASSDSEEQESTKEDNSALLKFQLKYETDLLFTRGSSQNYYEIKPNNSLQTYDRIGP PFNCTFKLQNLGLFPVDGIVIKITVPVATRGGNRLLQLTGFHGPENGMMCNIGGNDTDYRRTPSDEDLGRHPQLNYSNSD VISIDCSVNLAANEEVSFLLYGNLWMRTLRVLKFKTLRFIFNAALQRGFRSAFVFREEDPSRQIAFEISKVEESHIPIWI IIGSTLGGFLLLALLVLALWKLGFFQSATHKRDASQDQTTKDLD |
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