Gene
Gene Model ID | habu1_s188_g01049 |
---|---|
Locus | habu1_scaffold188 : 229346 ... 262095 : - |
To GenomeBrowser | habu1_scaffold188:229346..262095 |
Genes list of scaffold | habu1_scaffold188 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s188_g01049.t1 | 1 | 1 | Ski_Sno | 33 | 144 | 7.69999e-40 | 135.0 | 1.60028e-42 | 2.9e-39 | 133.1 |
habu1_s188_g01049.t1 | 1 | 1 | c-SKI_SMAD_bind | 156 | 248 | 2.4e-36 | 123.7 | 2.8e-39 | 5.2e-36 | 122.6 |
habu1_s188_g01049.t1 | 1 | 1 | EF-hand_6 | 862 | 891 | 1.1e-06 | 27.9 | 1.7e-06 | 0.0032 | 17.2 |
habu1_s188_g01049.t1 | 1 | 1 | EF-hand_7 | 942 | 979 | 1.5e-08 | 34.6 | 6.0e-06 | 0.011 | 15.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s188_g01049.t1 | gi|543354775|ref|XP_005521852.1| | PREDICTED: SKI family transcriptional corepressor 1 [Pseudopodoces humilis] | 0.0 |
habu1_s188_g01049.t1 | gi|504130418|ref|XP_004578011.1| | PREDICTED: SKI family transcriptional corepressor 1 isoform X3 [Ochotona princeps] | 0.0 |
habu1_s188_g01049.t1 | gi|504130421|ref|XP_004578012.1| | PREDICTED: SKI family transcriptional corepressor 1 isoform X4 [Ochotona princeps] | 0.0 |
habu1_s188_g01049.t1 | gi|504130412|ref|XP_004578009.1| | PREDICTED: SKI family transcriptional corepressor 1 isoform X1 [Ochotona princeps] | 0.0 |
habu1_s188_g01049.t1 | gi|504130415|ref|XP_004578010.1| | PREDICTED: SKI family transcriptional corepressor 1 isoform X2 [Ochotona princeps] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 0.0 |
Venom grand-1 | 0.0 |
Pit, infrared sensing | 0.0 |
Nose | 0.0 |
Brain-1 | 0.1 |
Eye | 0.1 |
fetal fibroblast | 0.0 |
venom gland-2 | 0.0 |
Brain-2 | 0.3 |
Spleen | 0.3 |
Lung | 0.0 |
Liver | 0.0 |
Kidney | 3.3 |
Pancreas | 0.5 |
Small intestine | 7.4 |
Large intestine | 1.5 |
Stomach | 0.0 |
heart | 0.0 |
ovary | 0.0 |
cheek muscle | 0.0 |
Transcript
Transcript ID | habu1_s188_g01049.t1 |
---|---|
Definition | - |
>habu1_s188_g01049.t1 cagcgcctctcccgcttcctcctcctttgcaggggtccggccgcccgcggcagagatggagccgctggccgccgccagtc agctgggagcggggcgcgaatctggctcctcctcctcctcgtcctcagcttcgtcctcttcctcgtcctcccctcactcc aagcaggagctgcagccctacgccggccccagccctctgaagcccaaccaggtcggggagacctcgctctacggcgtccc catcgtctcgctggtcatcgacgggcaggagcgcctctgcctggcgcagatctccaacacgctgctcaagaactacagct acaatgagatccacaaccgtcgggtggcgctgggcatcacctgcgtgcagtgcacgccggtgcagctggagatcctgcgc cgggccggcgccatgcccatctcctcgcgccgctgcggcatgatcaccaagcgcgaggccgagcggctctgcaagtcctt cctgggcgagcacaagccgcccaagctgcccgagaacttcgccttcgacgtggtgcacgagtgcgcgtggggctcccgcg gcagcttcatccccgcgcgctacaacagctcgcgcgccaagtgcatcaagtgcagctactgcagcatgtacttctcgccc aacaagttcatcttccactcgcaccgcacgcccgacgccaagtacacgcagcccgacgccgccaacttcaactcctggcg ccgccacctcaagctcagcgacaagggcgccgccgacgacctcagccacgcctgggaggacgtcaaggccatgttcaacg gcggcacccgcaagcggaccttctccctgcagggcggcgggggcggctcctcggcggccaagagcgcgctgcacccgccg ccgcccgccccggctgacctggccccggcgcacaagagcctgcgctgcagcggcggggccgacgaggcccccgggacgga gcgcggaggactgggcttgcccgccggggcgcacggcccggccgcggccgccgtacgaagctacccggtcatcccggtgc ccagcaaaggcttcgggatgctgcagaagctgcccccgccgctcttcccgccgccctacggcttccccgccgccgccttt ggcttgtgccccaagaagcaggaggaccccctgggcggcggcggcgatcccagcaaggcgggcgccctgacgcagggcct gttctgggggccgccgcacccgccgccgccgcacccgccgcacccgccgccgccccagccccccagcgctgccgccaagg agggcggcgtctacccctctttccccatgttctggccggcctccgggagcctcccggtgccgccctaccccgcccagagc caagccaaagcggccgccaccgccgtggtggtggcagctgctgcggccgccgcggccgcggccgccgaaccgctgggact acgcggccacgtggacctggagggctcggagccgtccggcagcgagcggagcagcgccaccccgcaggagggctgcgccg gcggcggcaccgagggcgagcgctgccccagcgccctctccagagccacggcggccctcggggaggaggagcgctccggc gacgaggccctgctggcgcccctgccgctccccaggaagggcagctacctctcggccttccgcccggtggtgaaggacgc cgagagcatcgccaagctctacgggaccagggaggtctacgccggcccgcggggctgcccgggctacctctccccggact tcctcagcgagggcagctccagctaccgctccctctcgcccgggaacgagacggcgggcgagccggacgtggacgtggag acgaaccgctttgcggaggacgacgacgacgacgaggaggacgaggcgcccgggggagacgcgccgccgccgccgccgct cttgcccgaggcggacgcgtctcttgcagcagccccgggaggaggcctggcaacggcggagaaggcggcggaaccggagg agaggccctcggagaggaccagcagccgggctggctatgaggcctatcctccggggagagaccactgtccgcaagcgctc aaagccgttgtctccctgggcccacccagcactccctatccctgcgccccagagaaaaacgaccccgaagacgatccctc ggccgcagaggagccggagggcaggaaaacctcgccaagccaaagaagcgccccgcagcccagcccgactcacgccgagc gaggtgaggaagtgaccctcctcgacgtcactgggactcagctgggggagaaggacctgggcgctctggcaagagacgaa ctgcagagactcctcctggagcagatggacctcaggaagaaattggaacgggaattccaaagtctcaaagacaacttcca ggaccagatgaagcgggagctggcctaccgggaggagatggtgcagcagctgcagatcgtgcgcgacaccctgtgcaacg agctcgaccaggaacggaaggcccgctacgccattcagcagaagctcaaagggctggggaaggggtttggggtgggctac accgatggtgttgcctatgggagtcccccctcaagggatggatgttgggcaaaatttctaacccaggatcagatcaatga attcaaggaatgtttttccctgtatgacaaaaggcagaaaggcagaatcaaggccagcgatctgatggttgtcatgcgca gtttgggcactagcccaactctaggagaggtggccaggcaccttcagctccacaaaatcgatatgaatgaagaactggag ttttcaactttcctgaccatcatgtataggcaaatacagcaggaagacccaaggaatgaaatcctcctggccatgttaat gctggaccagcaaaggaccggattcatctcagtggctgaattgcaggctaaactgatgaaccttggagaaaagctatcca aagaagaagtggacgcccttttgaagaacgccaaagtgggacacaacggactggattgaaccttggtgcatacaatggct gttgacattgtcagctgcacaataaactcattgaaattacattattcc |
Protein
Protein ID | habu1_s188_g01049.t1 |
---|---|
Definition | - |
>habu1_s188_g01049.t1 MEPLAAASQLGAGRESGSSSSSSSASSSSSSSPHSKQELQPYAGPSPLKPNQVGETSLYGVPIVSLVIDGQERLCLAQIS NTLLKNYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDVV HECAWGSRGSFIPARYNSSRAKCIKCSYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLSDKGAADDLSHAW EDVKAMFNGGTRKRTFSLQGGGGGSSAAKSALHPPPPAPADLAPAHKSLRCSGGADEAPGTERGGLGLPAGAHGPAAAAV RSYPVIPVPSKGFGMLQKLPPPLFPPPYGFPAAAFGLCPKKQEDPLGGGGDPSKAGALTQGLFWGPPHPPPPHPPHPPPP QPPSAAAKEGGVYPSFPMFWPASGSLPVPPYPAQSQAKAAATAVVVAAAAAAAAAAAEPLGLRGHVDLEGSEPSGSERSS ATPQEGCAGGGTEGERCPSALSRATAALGEEERSGDEALLAPLPLPRKGSYLSAFRPVVKDAESIAKLYGTREVYAGPRG CPGYLSPDFLSEGSSSYRSLSPGNETAGEPDVDVETNRFAEDDDDDEEDEAPGGDAPPPPPLLPEADASLAAAPGGGLAT AEKAAEPEERPSERTSSRAGYEAYPPGRDHCPQALKAVVSLGPPSTPYPCAPEKNDPEDDPSAAEEPEGRKTSPSQRSAP QPSPTHAERGEEVTLLDVTGTQLGEKDLGALARDELQRLLLEQMDLRKKLEREFQSLKDNFQDQMKRELAYREEMVQQLQ IVRDTLCNELDQERKARYAIQQKLKGLGKGFGVGYTDGVAYGSPPSRDGCWAKFLTQDQINEFKECFSLYDKRQKGRIKA SDLMVVMRSLGTSPTLGEVARHLQLHKIDMNEELEFSTFLTIMYRQIQQEDPRNEILLAMLMLDQQRTGFISVAELQAKL MNLGEKLSKEEVDALLKNAKVGHNGLD |