Gene
| Gene Model ID | habu1_s188_g01057 |
|---|---|
| Locus | habu1_scaffold188 : 740217 ... 745530 : + |
| To GenomeBrowser | habu1_scaffold188:740217..745530 |
| Genes list of scaffold | habu1_scaffold188 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 60s ribosomal protein partial | GO:0003735 GO:0005840 GO:0006412 GO:0042254 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s188_g01057.t1 | 1 | 1 | Ribosomal_L4 | 23 | 262 | 1.4013e-45 | 154.8 | 0.0 | 2.8026e-45 | 154.0 |
| habu1_s188_g01057.t1 | 1 | 1 | Ribos_L4_asso_C | 276 | 352 | 1.3e-31 | 108.3 | 1.7e-35 | 1.3e-31 | 108.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s188_g01057.t1 | gi|602627674|ref|XP_007420781.1| | PREDICTED: 60S ribosomal protein L4, partial [Python bivittatus] | 0.0 |
| habu1_s188_g01057.t1 | gi|704156983|ref|XP_010137439.1| | PREDICTED: 60S ribosomal protein L4, partial [Buceros rhinoceros silvestris] | 0.0 |
| habu1_s188_g01057.t1 | gi|514448809|ref|XP_003463522.2| | PREDICTED: 60S ribosomal protein L4, partial [Cavia porcellus] | 0.0 |
| habu1_s188_g01057.t1 | gi|695148357|ref|XP_009501719.1| | PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L4, partial [Phalacrocorax carbo] | 0.0 |
| habu1_s188_g01057.t1 | gi|701383303|ref|XP_009993623.1| | PREDICTED: 60S ribosomal protein L4-A-like [Chaetura pelagica] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 556.5 |
| Venom grand-1 | 2947.1 |
| Pit, infrared sensing | 1190.1 |
| Nose | 668.3 |
| Brain-1 | 159.3 |
| Eye | 667.0 |
| fetal fibroblast | 919.2 |
| venom gland-2 | 2390.5 |
| Brain-2 | 126.6 |
| Spleen | 1192.0 |
| Lung | 979.0 |
| Liver | 2229.8 |
| Kidney | 1609.0 |
| Pancreas | 2648.5 |
| Small intestine | 2302.1 |
| Large intestine | 1039.6 |
| Stomach | 1634.4 |
| heart | 830.6 |
| ovary | 219.8 |
| cheek muscle | 1030.1 |
Transcript
| Transcript ID | habu1_s188_g01057.t1 |
|---|---|
| Definition | - |
>habu1_s188_g01057.t1 gaggggctcctcagcggtcttgaaggtgcccatcatggcttgtactcgaccattagtatcggtgtactccgaaaagggag aggtatcaggtaaaaatgtcaccatgcctgctgttttcaaggcaccgattcgcccagatattgtgaattttgttcacact aatttgaggaagaacagcaggcagccgtatgctgtcagtgaacttgcagggcaccagaccagtgctgaatcctggggtac tggaagggcagttgctcgtattccaagggttcgtggaggtggaactcatcgatctggtcagggtgcttttggcaatatgt gtcgtggtggtcgcatgtttgccccaaccaaaacttggcgacgctggcaccgcagagtgaacatcactcagaagcgttat gccatctgctctgctctggcagcttctgcccttccagctctagtcatgtctaaaggtcaccgcattgaagagattccaga acttcctctggtagttgaagacaaagttgaaggctacaaaaaaaccaaggaagctgttctcctacttaagaagctgaaag cttggaatgatatcaaaaaggtctatgcctctcagcgcatgcgggcaggcaaaggtaaaatgaggaaccgccgtcgcatc cagcgcaaaggaccttgcatcatctataacgaagacaacggcgtcataaaagcattcaggaatatcccaggaattactct tctcaatgtgaacaagctgaacctcttgagacttgctcctggtggccacgttggacgtttctgcatttggactgaaagtg ccttccgcaagttggatgacttatatggcacttggcgcaagcctgccaccctgaaaagtagctacaatctgccaatgcac aagatgaccaatactgatcttggaaggatcctaaaaagccaggagatccagaaagccctacgtccacccaagaagaagat tcatcgtagagtccttaagaagaatccactgaagaatttgagaatcatgattaaattgaacccatatgccaaaactatga gacgtaacactattctgcgccatgctaaaaatcacaaactcagagaggagaaggcagcgaaagggaaagcaaagatccaa gtggcaggtgctgcaaagagtgaaagtacagcataaaaagagcttctgcacttttatgatacaatgctcaaaaggtctca atttacccttaataaaaaaatatatccaaagtggtctc |
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Protein
| Protein ID | habu1_s188_g01057.t1 |
|---|---|
| Definition | - |
>habu1_s188_g01057.t1 MACTRPLVSVYSEKGEVSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNSRQPYAVSELAGHQTSAESWGTGRAVARIPRVR GGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNITQKRYAICSALAASALPALVMSKGHRIEEIPELPLVVEDKVEG YKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRKGPCIIYNEDNGVIKAFRNIPGITLLNVNKLNLLRL APGGHVGRFCIWTESAFRKLDDLYGTWRKPATLKSSYNLPMHKMTNTDLGRILKSQEIQKALRPPKKKIHRRVLKKNPLK NLRIMIKLNPYAKTMRRNTILRHAKNHKLREEKAAKGKAKIQVAGAAKSESTA |
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