Gene
| Gene Model ID | habu1_s188_g01058 |
|---|---|
| Locus | habu1_scaffold188 : 746787 ... 752966 : + |
| To GenomeBrowser | habu1_scaffold188:746787..752966 |
| Genes list of scaffold | habu1_scaffold188 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| snrna-activating protein complex subunit 5 | GO:0003700 GO:0005634 GO:0005667 GO:0006355 GO:0006366 GO:0006384 GO:0045449 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s188_g01058.t1 | 1 | 1 | SNAPc19 | 7 | 90 | 1.5e-24 | 85.9 | 2.6e-28 | 1.9e-24 | 85.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s188_g01058.t1 | gi|564250460|ref|XP_006264296.1| | PREDICTED: snRNA-activating protein complex subunit 5 [Alligator mississippiensis] | 8.0e-26 |
| habu1_s188_g01058.t1 | gi|126277076|ref|XP_001367282.1| | PREDICTED: snRNA-activating protein complex subunit 5 [Monodelphis domestica] | 2.0e-24 |
| habu1_s188_g01058.t1 | gi|530637189|ref|XP_005305418.1| | PREDICTED: snRNA-activating protein complex subunit 5 [Chrysemys picta bellii] | 9.0e-24 |
| habu1_s188_g01058.t1 | gi|634828058|ref|XP_007955721.1| | PREDICTED: snRNA-activating protein complex subunit 5 [Orycteropus afer afer] | 9.0e-23 |
| habu1_s188_g01058.t1 | gi|674056189|ref|XP_008834568.1| | PREDICTED: snRNA-activating protein complex subunit 5 [Nannospalax galili] | 1.0e-22 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.2 |
| Venom grand-1 | 11.7 |
| Pit, infrared sensing | 11.9 |
| Nose | 10.6 |
| Brain-1 | 13.3 |
| Eye | 22.7 |
| fetal fibroblast | 9.6 |
| venom gland-2 | 14.5 |
| Brain-2 | 16.7 |
| Spleen | 16.2 |
| Lung | 9.2 |
| Liver | 5.3 |
| Kidney | 5.8 |
| Pancreas | 16.0 |
| Small intestine | 6.1 |
| Large intestine | 6.8 |
| Stomach | 6.2 |
| heart | 65.7 |
| ovary | 10.6 |
| cheek muscle | 25.0 |
Transcript
| Transcript ID | habu1_s188_g01058.t1 |
|---|---|
| Definition | - |
>habu1_s188_g01058.t1 gcgcgcgcccccgaggcggggaggggagcaggatgctgagccgcctgcaggagctccgcaaggaggaagagacgttgctg cgggtcaaggaggcgctgcacgaccagctcacccgcctcaaggtggaagagttggctcttcggtccatgatcaatacccg ggaagggactgtgttcactccttcagctgctgtgatggaggagcacgcaaacatggacaatgaaatggccattaaccaga ctaaactgcagctacaagtgcatgctgatgatgaggaagaggaggaggaagaggaggattcctaatgggcaaatgttgct gtcaggccagtgttctgtgacagactcccaagcctccctagcttcgacgaaactttgtgtagttctacagagactaaact acaatcagaagtgccgctgagcatctcacaaacttccaaaggtggtaataaattatggggtgggttggaaaaagatagta ttaaagcctaactatgtagcacaagtc |
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Protein
| Protein ID | habu1_s188_g01058.t1 |
|---|---|
| Definition | - |
>habu1_s188_g01058.t1 MLSRLQELRKEEETLLRVKEALHDQLTRLKVEELALRSMINTREGTVFTPSAAVMEEHANMDNEMAINQTKLQLQVHADD EEEEEEEEDS |
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