Gene
| Gene Model ID | habu1_s1917_g07041 |
|---|---|
| Locus | habu1_scaffold1917 : 140756 ... 147426 : + |
| To GenomeBrowser | habu1_scaffold1917:140756..147426 |
| Genes list of scaffold | habu1_scaffold1917 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: u4 u6 small nuclear ribonucleoprotein prp4 | GO:0008380 GO:0015030 GO:0071001 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1917_g07041.t1 | 1 | 1 | PRP4 | 95 | 124 | 8.3e-15 | 53.7 | 2.2e-18 | 8.3e-15 | 53.7 |
| habu1_s1917_g07041.t1 | 6 | 1 | WD40 | 216 | 246 | 0.0 | 164.0 | 7.8e-07 | 0.0029 | 17.4 |
| habu1_s1917_g07041.t1 | 6 | 2 | WD40 | 251 | 296 | 0.0 | 164.0 | 1.8e-09 | 6.5e-06 | 25.8 |
| habu1_s1917_g07041.t1 | 6 | 3 | WD40 | 319 | 350 | 0.0 | 164.0 | 2.6e-07 | 0.00096 | 18.9 |
| habu1_s1917_g07041.t1 | 6 | 4 | WD40 | 354 | 392 | 0.0 | 164.0 | 1.9e-15 | 7.1e-12 | 44.7 |
| habu1_s1917_g07041.t1 | 6 | 5 | WD40 | 397 | 434 | 0.0 | 164.0 | 3.1e-10 | 1.2e-06 | 28.2 |
| habu1_s1917_g07041.t1 | 6 | 6 | WD40 | 439 | 476 | 0.0 | 164.0 | 5.5e-13 | 2.0e-09 | 36.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1917_g07041.t1 | gi|719765228|ref|XP_010217284.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4, partial [Tinamus guttatus] | 0.0 |
| habu1_s1917_g07041.t1 | gi|690448690|ref|XP_009324663.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4 [Pygoscelis adeliae] | 0.0 |
| habu1_s1917_g07041.t1 | gi|686610469|ref|XP_009281905.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4 [Aptenodytes forsteri] | 0.0 |
| habu1_s1917_g07041.t1 | gi|700417214|ref|XP_009946627.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4, partial [Leptosomus discolor] | 0.0 |
| habu1_s1917_g07041.t1 | gi|697828454|ref|XP_009634600.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4 [Egretta garzetta] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.7 |
| Venom grand-1 | 10.2 |
| Pit, infrared sensing | 7.3 |
| Nose | 5.7 |
| Brain-1 | 3.4 |
| Eye | 6.6 |
| fetal fibroblast | 14.5 |
| venom gland-2 | 6.1 |
| Brain-2 | 3.1 |
| Spleen | 7.6 |
| Lung | 7.4 |
| Liver | 11.3 |
| Kidney | 10.5 |
| Pancreas | 14.1 |
| Small intestine | 8.6 |
| Large intestine | 7.1 |
| Stomach | 7.3 |
| heart | 7.4 |
| ovary | 52.3 |
| cheek muscle | 10.0 |
Transcript
| Transcript ID | habu1_s1917_g07041.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07041.t1 ctgccaggggcgctatggcttcgttgcgggtctccgcggggacaaaaatgaaagcttccgacgatggagacgcccctcct gctaagaagggccccattttctatgggagcctggaggagaaagagcgcgagcggatcctgaagggcgagtcggggatgat gggcaaagaagccgtcaaagcagccattgaggcgggcaatatcaacatctccaccggcgaagtttttgacctggaagacc acatcagcgagcgtcaagccgaagtcctggccgaatttgagcgccggaaacgggcgaggcaaatcaacgtttccacagac gactccgaggtcaaggcctgcttacgggcgctcggagaacccataacgctgtttggagaagggccagccgaaaggaggga gagactgcgtaacattctctcggtggttggtccggatgccttgaaaaaaaccaagaaggatgatgaaaaatccaagaagt ccaaagaggagtatcagcagacttggtaccacgaagggccaaccaccttgaagacagccagactctggattgcaaactac tctcttccacgagcagtgaagagactggacgaagcccgtttgtttaaggaggtgcccgaagccacacggacatcccagaa acaagagcttcacaaatctttgaggtctctgaataacttctgcagccaaattggggatgaccgtccgatttccttttgtc acttcagttccaactccaaattcttggccacggcctgttggagcggcctgtgcaagatatggtcagtgccagattgcaag cttgttctcactttgagagggcataataccaacgttggcgccatcgtcttccatcccaaggcaaccatctcattggacaa gaaggacgtcaatctggcgtcttgcgcagccgacggctctgtcaagctctggagtctagaaagctacgaccactcctggc gtttgtgggacctggaagcccaggaggagatcctccaccaggaggggcacagcaaaggggtctacgatatcgccttccac ggtgacggctccctagctggcaccggcggcctcgatgcatttggccgcgtctgggacctgcgcaccggccgctgcatcat gttcctggaaggacatctcaaagagatctacggggtcagcttttcccctaatggataccacatcgctaccggcagtggag acaacacctgcaaagtttgggaccttcgccagaggaggtgtatttacaccatccccgcccatcagaatctgatcaccggg gtgaaatatgaaccaaatcacggcaacttcttgctgaccggggcctacgacaacacggccaaggtgtggacccaccctgg ctggaaccccttgaagaccttggccggacacgagggcaaagtcatgggtctggacatttccttggacgggcagctgattg ccacctgctcctacgaccggaccttcaagctatggatggcagaataagccgggtatttcccttctcacgtccctggggtg acccgggttgttttaggtcggggaaatccgatcacaggtggcgtgcggagtccgcagaccatcctcttcttcctcctcct cctgtgctagtggcgttcaaggaaacgcccgtttgagaatctatttttttatactcctccttctctctccggtgggctcc agattctctccattgtgggagggaaaaaaccccacacacttttcaacctgggtggtaaaggttggcttttgctgatccct ggacacacacacacacacacacttctgggaggtcccctcaattagggggtctttggacctctgtttgggaatagggtcct ttgttgggcagagactttttttaaaaacaacaacgacgacaaagtgtattaaagcaaaatggctggttctgtttc |
|
Protein
| Protein ID | habu1_s1917_g07041.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07041.t1 MKASDDGDAPPAKKGPIFYGSLEEKERERILKGESGMMGKEAVKAAIEAGNINISTGEVFDLEDHISERQAEVLAEFERR KRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGPDALKKTKKDDEKSKKSKEEYQQTWYHEGPTT LKTARLWIANYSLPRAVKRLDEARLFKEVPEATRTSQKQELHKSLRSLNNFCSQIGDDRPISFCHFSSNSKFLATACWSG LCKIWSVPDCKLVLTLRGHNTNVGAIVFHPKATISLDKKDVNLASCAADGSVKLWSLESYDHSWRLWDLEAQEEILHQEG HSKGVYDIAFHGDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGVSFSPNGYHIATGSGDNTCKVWDLRQRRCIY TIPAHQNLITGVKYEPNHGNFLLTGAYDNTAKVWTHPGWNPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWMAE |
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