Gene
| Gene Model ID | habu1_s1917_g07042 |
|---|---|
| Locus | habu1_scaffold1917 : 149160 ... 152225 : - |
| To GenomeBrowser | habu1_scaffold1917:149160..152225 |
| Genes list of scaffold | habu1_scaffold1917 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ring finger protein 183-like isoform x2 | GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1917_g07042.t1 | 1 | 1 | zf-RING_2 | 14 | 62 | 2.0e-08 | 33.8 | 4.5e-11 | 4.8e-08 | 32.7 |
| habu1_s1917_g07042.t1 | 1 | 1 | zf-RING_5 | 14 | 62 | 1.1e-07 | 31.4 | 2.2e-10 | 2.3e-07 | 30.4 |
| habu1_s1917_g07042.t1 | 1 | 1 | zf-C3HC4 | 15 | 61 | 3.4e-07 | 29.8 | 9.1e-10 | 9.7e-07 | 28.3 |
| habu1_s1917_g07042.t1 | 1 | 1 | zf-C3HC4_4 | 15 | 61 | 1.9e-06 | 27.6 | 4.6e-09 | 4.8e-06 | 26.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1917_g07042.t1 | gi|602627384|ref|XP_007420640.1| | PREDICTED: RING finger protein 183 [Python bivittatus] | 0.0 |
| habu1_s1917_g07042.t1 | gi|557279351|ref|XP_006022715.1| | PREDICTED: RING finger protein 183-like isoform X2 [Alligator sinensis] | 0.0 |
| habu1_s1917_g07042.t1 | gi|557279349|ref|XP_006022714.1| | PREDICTED: RING finger protein 183-like isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s1917_g07042.t1 | gi|564258825|ref|XP_006268342.1| | PREDICTED: RING finger protein 183-like isoform X1 [Alligator mississippiensis] | 0.0 |
| habu1_s1917_g07042.t1 | gi|611977499|ref|XP_007475080.1| | PREDICTED: RING finger protein 183 isoform X1 [Monodelphis domestica] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.2 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 0.5 |
| Nose | 1.6 |
| Brain-1 | 0.3 |
| Eye | 0.1 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 0.8 |
| Spleen | 0.1 |
| Lung | 0.6 |
| Liver | 0.0 |
| Kidney | 0.2 |
| Pancreas | 0.0 |
| Small intestine | 0.2 |
| Large intestine | 1.8 |
| Stomach | 0.1 |
| heart | 0.0 |
| ovary | 6.0 |
| cheek muscle | 1.1 |
Transcript
| Transcript ID | habu1_s1917_g07042.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07042.t1 ggaatgaagaggatgcaattggcaagcgatggattttgagcgctttaagaaaagggggcttcagtctgtccagcaacccc accgcataccccaggatgccatgaaaatggtccaccgtgcttctgctggctctttcgagcctccgagggtaattttaaga aacatcagactgtcaaagagagaccagccaaactagaggaggcgtcaagccgggaattagtctggaatcctctcaggtgc tgttgagccttatctaatccggtccaggtgcatacctcctgtctgtgaatcgggcgtgagcaataacgtcccgaattgaa ctcttcacgtgtggagccggtctgtcgcgctggacacggcccctcctgactttgcgagcaaaataggcatggccaaaaat gtcgaccaggagccaagcttggtctccgaatgcgcagtctgctggaacgcttacgataacattttccggaccccgaaact ccttcgatgcggccattccttctgcattgagtgcctggcgcacctcagcctgatctccgccacccggagccagctgcctt gccctctctgccgctgcctgaccatgttgccagctaaccagcaggtgactgaactggccaccgacgtcaccatcttgcac aagttgggcctggagcccaaccacatcatcctggaaggacggcaactgtgtctgaaggagcagcggaagaccaggtactt tctccgccaacccaaggtctacaccctagacctgggcgtggaccctgaactcggcacccagacttaccctgagagccccc aaccgatgaccgtagccagcacccccaccgttcctcggcgttcccttctccgagagtgcatccggaacccgcatcttcgg atcttcacgtccaacgccttcgccacaaagaccaagttctccttgacagagaacagactccagaatgtgtgaatggcgca gttcctactgtatgccatccaatccagaaatcttaagagtttgccactactctaccttaccctggatggaaaaaaaaacc ccaatgataaaacaaaaacaaacagattaagatcaagaagggggaggagacaacctgcctcctgaagttgtaggtgctcc aacattagggttttcaagaagagattgtctgaaacggtattgggtttcctgcctgagtagggggtaggactagaagacct ccaaggtcccttccaactcttataatattctgttgacagtgcttaacggaaagtcaagttaagtttgtctttgcacttaa gatgcagcagcgtttgtaaatgcaaaagtgtgcatatgtgtatgcgtgtgagagagagaaatcagagaatcaatcatatt aaagaaacatttgtgtgtggttttt |
|
Protein
| Protein ID | habu1_s1917_g07042.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07042.t1 MAKNVDQEPSLVSECAVCWNAYDNIFRTPKLLRCGHSFCIECLAHLSLISATRSQLPCPLCRCLTMLPANQQVTELATDV TILHKLGLEPNHIILEGRQLCLKEQRKTRYFLRQPKVYTLDLGVDPELGTQTYPESPQPMTVASTPTVPRRSLLRECIRN PHLRIFTSNAFATKTKFSLTENRLQNV |
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