Gene
| Gene Model ID | habu1_s1917_g07046 |
|---|---|
| Locus | habu1_scaffold1917 : 199346 ... 204456 : + |
| To GenomeBrowser | habu1_scaffold1917:199346..204456 |
| Genes list of scaffold | habu1_scaffold1917 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna exonuclease 4 | GO:0003676 GO:0005634 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1917_g07046.t1 | 1 | 1 | RNase_T | 236 | 386 | 5.1e-28 | 98.4 | 2.7e-31 | 1.0e-27 | 97.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1917_g07046.t1 | gi|558165314|ref|XP_006123800.1| | PREDICTED: RNA exonuclease 4 [Pelodiscus sinensis] | 0.0 |
| habu1_s1917_g07046.t1 | gi|50757227|ref|XP_415436.1| | PREDICTED: RNA exonuclease 4 [Gallus gallus] | 0.0 |
| habu1_s1917_g07046.t1 | gi|602627378|ref|XP_007420637.1| | PREDICTED: RNA exonuclease 4 [Python bivittatus] | 0.0 |
| habu1_s1917_g07046.t1 | gi|530599637|ref|XP_005293314.1| | PREDICTED: RNA exonuclease 4 [Chrysemys picta bellii] | 0.0 |
| habu1_s1917_g07046.t1 | gi|591372763|ref|XP_007061082.1| | PREDICTED: RNA exonuclease 4 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.0 |
| Venom grand-1 | 7.6 |
| Pit, infrared sensing | 6.9 |
| Nose | 6.3 |
| Brain-1 | 2.3 |
| Eye | 5.2 |
| fetal fibroblast | 19.6 |
| venom gland-2 | 17.8 |
| Brain-2 | 2.7 |
| Spleen | 8.9 |
| Lung | 4.8 |
| Liver | 9.0 |
| Kidney | 8.7 |
| Pancreas | 11.2 |
| Small intestine | 6.6 |
| Large intestine | 10.6 |
| Stomach | 7.8 |
| heart | 6.1 |
| ovary | 85.0 |
| cheek muscle | 7.0 |
Transcript
| Transcript ID | habu1_s1917_g07046.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07046.t1 tttcggtttatcagtgctgctgcagccacgcggatttgctgcagggacggcggggaaagccggaggatcatcccgtgtgc tcaggaagtcgtttatggagcttgggagccccgaaaggccagttctagtgcttgtggtcaaagctgaatgactgtctcgt atcaaagatgaccaaaatgaaaaagaaggactctccgtcccaaacagataactctacaactaaaccagacaaccttaaga atcagagaaagaagaagaagaagaagaaaaatatattttggaaaaagatcaaccaagtagagaagagagcgagcaaagaa accaaagcagtagtagaattgcctccaaaaacttctcaggaagtttcgtcaaactggaaagccctacaagagcttttgca acaaaagtccagctgtttgaattctgccgttactgcacccaacacatattccaagaaaaaggacgggaaaactgttcctt gcgtattgggaccaaatgggattgggaagaagctgacgtcaaaggttcaggttccaagtttgagtcccgcaggtgtcacg agatctaaaaagtccactcaagtgaagaaaccaccacaggttcaagaggctggcaaagaggagagaaatgtccaggtgga cagtggagagaagaagcaaagagatattaaacataaacgaaggaaacaggatgatccagtggcggcagcatctatagaca tctggtttgatgacgtggatccagatgatatcgaagcagccttgggaccggaagccgccaaagtagcccgggagaatctg ggcatcaaagaggagagaatccagcagacaacggaacctgagctggtgaaagaacatgcttttgaagggctaaccaaagc agtggccatcgactgtgagatggtgggcgtggggcccaccggtgaagacagcatcctggcccgtgtctcagttgtgaatt tatttggcaaatgtatctatgacaagtatgtcaaggcaacggaaaaagtcacagactacagaaccgccgttagtgggatt cggcctgagcacttaaaaacaggagaagatttcaaaaccgtccagaaagacgtagctgacatcctaaggggtaggatctt agttggacacgctcttcacaatgacttaaagattctacttcttgatcatcccaaaaagaaaatccgggacacacaaagat acaaacctttcaaaaagcaggtcaagagcctaagaccctccctcaaactgctgtgcgataaactgctcaacgtcaaggtg cagacctcagaacacagttcggttcaagacgctcaagctgcgatgcgactttacactttggtgaaaaaacagtgggaagc ctccttgaaaggaatccccaaggcccagaaagactaaatccggaccgtttcacgtccggctgtgttcgctgcagcactgg ccgatcgaaaaacttttgcttgatcagtcctgcagctgctcttctcccttaacttggctttggccattaatcgggggttt tacttcaacggaagacacgttttaagtttaactgaaatggcagccatcttttctccttacctcttctgcgttaggcagat ggttttgaaattgtgtttgaggttccaaaattagcggtaatacagcagagaaaagcagattctgtc |
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Protein
| Protein ID | habu1_s1917_g07046.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07046.t1 MKKKDSPSQTDNSTTKPDNLKNQRKKKKKKKNIFWKKINQVEKRASKETKAVVELPPKTSQEVSSNWKALQELLQQKSSC LNSAVTAPNTYSKKKDGKTVPCVLGPNGIGKKLTSKVQVPSLSPAGVTRSKKSTQVKKPPQVQEAGKEERNVQVDSGEKK QRDIKHKRRKQDDPVAAASIDIWFDDVDPDDIEAALGPEAAKVARENLGIKEERIQQTTEPELVKEHAFEGLTKAVAIDC EMVGVGPTGEDSILARVSVVNLFGKCIYDKYVKATEKVTDYRTAVSGIRPEHLKTGEDFKTVQKDVADILRGRILVGHAL HNDLKILLLDHPKKKIRDTQRYKPFKKQVKSLRPSLKLLCDKLLNVKVQTSEHSSVQDAQAAMRLYTLVKKQWEASLKGI PKAQKD |
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