Gene
| Gene Model ID | habu1_s1917_g07048 |
|---|---|
| Locus | habu1_scaffold1917 : 222846 ... 226918 : + |
| To GenomeBrowser | habu1_scaffold1917:222846..226918 |
| Genes list of scaffold | habu1_scaffold1917 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| surfeit locus protein 4 | GO:0005793 GO:0007030 GO:0010638 GO:0016021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1917_g07048.t1 | 1 | 1 | SURF4 | 15 | 275 | 0.0 | 406.9 | 0.0 | 0.0 | 406.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1917_g07048.t1 | gi|558165282|ref|XP_006123793.1| | PREDICTED: surfeit locus protein 4 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s1917_g07048.t1 | gi|591372765|ref|XP_007061083.1| | PREDICTED: surfeit locus protein 4 [Chelonia mydas] | 0.0 |
| habu1_s1917_g07048.t1 | gi|557294838|ref|XP_006029847.1| | PREDICTED: surfeit locus protein 4 [Alligator sinensis] | 0.0 |
| habu1_s1917_g07048.t1 | gi|564233155|ref|XP_006260946.1| | PREDICTED: surfeit locus protein 4 [Alligator mississippiensis] | 0.0 |
| habu1_s1917_g07048.t1 | gi|641764411|ref|XP_008167322.1| | PREDICTED: surfeit locus protein 4 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 79.5 |
| Venom grand-1 | 73.8 |
| Pit, infrared sensing | 55.5 |
| Nose | 47.0 |
| Brain-1 | 10.4 |
| Eye | 40.1 |
| fetal fibroblast | 153.0 |
| venom gland-2 | 203.1 |
| Brain-2 | 10.5 |
| Spleen | 56.6 |
| Lung | 29.2 |
| Liver | 196.0 |
| Kidney | 35.8 |
| Pancreas | 123.2 |
| Small intestine | 29.7 |
| Large intestine | 27.6 |
| Stomach | 45.6 |
| heart | 16.1 |
| ovary | 103.1 |
| cheek muscle | 26.7 |
Transcript
| Transcript ID | habu1_s1917_g07048.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07048.t1 atccgcccgcttggcagctgactcgtctttacgacggttgcagcttcccggggtcgtgtgatccccttttgcggcttctg atgagaaaagtcaaatgggaaaacccagattcacttaaccaccggtttactaacttaatgacaagtttcctgcgggtgac gaagcagtaccttccccacgtggcccggctctgtctgatcagcaccttcctggaagacgggattcgcatgtggttccagt ggagcgagcagagagattacatcaacagcacgtggaactgcggctacgtgctggcctccatcttcgtcttcattaacctc tttgggcaattaagcggttgcattctggtgctgagcaggaattttgtccaatacgcctgctttggattattcggaattat tgcattacagacaattgcatacagcattttatgggacttgaagtttttgatgagaaatcttgctctaggagggggtttgc tgttgctgctggcggagtctcggtcggaaggaaaaagcatgtttgccggggtacccaccatgcgggaaagctccccgaag caatacatgcagctggggggacgagtgcttctagtcctcatgtttatgaccctcctgcatttagatgttagcttcttttc gatcctgcagaacatggtgggcacggtgctgatcatcctagtggccattgggtttaaaaccaagctggcggccttgactt tggtcatctggctctttgccatcaacctgtatttcaacgctttctggactgtccctggctacaagcctatgcacgatttc ctcaagtacgactttttccaaaccatgtcggtcatcggaggcctgcttctcgtggtggccctgggtcccggtggcgtctc catggacgagaagaagaaggaatggtagagaagaacggaggaacggaggggaagaagaaaaaaaaaggaacacagcgtct cggcatccggggaccgactcgacagttttgggaattcaaaac |
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Protein
| Protein ID | habu1_s1917_g07048.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07048.t1 MRKVKWENPDSLNHRFTNLMTSFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYINSTWNCGYVLASIFVFINL FGQLSGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAESRSEGKSMFAGVPTMRESSPK QYMQLGGRVLLVLMFMTLLHLDVSFFSILQNMVGTVLIILVAIGFKTKLAALTLVIWLFAINLYFNAFWTVPGYKPMHDF LKYDFFQTMSVIGGLLLVVALGPGGVSMDEKKKEW |
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