Gene
| Gene Model ID | habu1_s1917_g07051 |
|---|---|
| Locus | habu1_scaffold1917 : 243306 ... 247218 : + |
| To GenomeBrowser | habu1_scaffold1917:243306..247218 |
| Genes list of scaffold | habu1_scaffold1917 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mediator of rna polymerase ii transcription subunit 22 isoform x1 | GO:0006366 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1917_g07051.t1 | 1 | 1 | Med22 | 20 | 130 | 2.2e-34 | 117.7 | 7.6e-38 | 2.8e-34 | 117.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1917_g07051.t1 | gi|602627368|ref|XP_007420632.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 22 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s1917_g07051.t1 | gi|543372132|ref|XP_005529287.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 22 isoform X2 [Pseudopodoces humilis] | 0.0 |
| habu1_s1917_g07051.t1 | gi|686616647|ref|XP_009285239.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 22 isoform X2 [Aptenodytes forsteri] | 0.0 |
| habu1_s1917_g07051.t1 | gi|564233163|ref|XP_006260950.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 22 isoform X2 [Alligator mississippiensis] | 0.0 |
| habu1_s1917_g07051.t1 | gi|542172977|ref|XP_005494174.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 22 isoform X2 [Zonotrichia albicollis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 13.4 |
| Venom grand-1 | 43.5 |
| Pit, infrared sensing | 21.6 |
| Nose | 12.3 |
| Brain-1 | 6.7 |
| Eye | 13.2 |
| fetal fibroblast | 34.9 |
| venom gland-2 | 20.7 |
| Brain-2 | 5.9 |
| Spleen | 19.1 |
| Lung | 23.8 |
| Liver | 47.5 |
| Kidney | 32.8 |
| Pancreas | 29.9 |
| Small intestine | 35.8 |
| Large intestine | 27.1 |
| Stomach | 32.9 |
| heart | 16.9 |
| ovary | 55.3 |
| cheek muscle | 38.2 |
Transcript
| Transcript ID | habu1_s1917_g07051.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07051.t1 ggacaacccaatacaacaggaagagagtctccttccccgaacagccaatcatctttcaggatgggttaattcggccaatc gtgagaaagctctcttttcggatgagaaatgcttgcttaaggagcggaagtaagaagggtggatgttgataagccatgtc gcaacaaagggtcctaccccagagcaaagaaacgctcctccagtcttataacaagagattgaaagatgatgtcaaatcca tcatggacaactttacggaaatcattaaatctgcaaagatcgaagaagaaacgcaagtgtctcgtgcaacgcaaggcgaa caggacaactatgagatgcacgtcagagcagcaaatattgtccgagccggcgagtccctcatgaagctggtgtcggatct gaagcaattcttaatccttaatgattttccctcggtcaacgaagccatcaaccaacgcaatcaacaactgcgggctctcc aagaggaatgcgacaagaaactgattgcgctgcgggatgaaatctccgtcgacctctacgaactggaagaggaatattac tcttccagctacggcgtctgcgatgccgccaatctctctctttccgaagcctactggggacaggaaccggcggggtcacc tctggaaaatctcgtcaccgcctccgtggctgccgccaacgccggcgcgatggagcagaatcttcccggcgcacagggct cggtccctttgcatccgcacatcaacgggcacggagtgggtgcccccgagcacccctaaaagggatcccctgcttgcacg caggcggcattggaacaataaacttgagcaacagaaactttgat |
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Protein
| Protein ID | habu1_s1917_g07051.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07051.t1 MSQQRVLPQSKETLLQSYNKRLKDDVKSIMDNFTEIIKSAKIEEETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVS DLKQFLILNDFPSVNEAINQRNQQLRALQEECDKKLIALRDEISVDLYELEEEYYSSSYGVCDAANLSLSEAYWGQEPAG SPLENLVTASVAAANAGAMEQNLPGAQGSVPLHPHINGHGVGAPEHP |
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