Gene
| Gene Model ID | habu1_s1917_g07055 |
|---|---|
| Locus | habu1_scaffold1917 : 352638 ... 360195 : - |
| To GenomeBrowser | habu1_scaffold1917:352638..360195 |
| Genes list of scaffold | habu1_scaffold1917 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| general transcription factor 3c polypeptide 5 | GO:0000127 GO:0035914 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1917_g07055.t1 | 1 | 1 | Tau95 | 30 | 328 | 0.0 | 227.4 | 0.0 | 0.0 | 226.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1917_g07055.t1 | gi|530599682|ref|XP_005293335.1| | PREDICTED: general transcription factor 3C polypeptide 5 [Chrysemys picta bellii] | 0.0 |
| habu1_s1917_g07055.t1 | gi|564231346|ref|XP_006260069.1| | PREDICTED: general transcription factor 3C polypeptide 5 [Alligator mississippiensis] | 0.0 |
| habu1_s1917_g07055.t1 | gi|543372142|ref|XP_005529292.1| | PREDICTED: general transcription factor 3C polypeptide 5 [Pseudopodoces humilis] | 0.0 |
| habu1_s1917_g07055.t1 | gi|326930452|ref|XP_003211361.1| | PREDICTED: general transcription factor 3C polypeptide 5 isoform X1 [Meleagris gallopavo] | 0.0 |
| habu1_s1917_g07055.t1 | gi|663272844|ref|XP_008495531.1| | PREDICTED: general transcription factor 3C polypeptide 5 [Calypte anna] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.1 |
| Venom grand-1 | 3.4 |
| Pit, infrared sensing | 2.3 |
| Nose | 2.5 |
| Brain-1 | 2.5 |
| Eye | 2.0 |
| fetal fibroblast | 7.7 |
| venom gland-2 | 3.6 |
| Brain-2 | 3.5 |
| Spleen | 3.1 |
| Lung | 3.4 |
| Liver | 6.3 |
| Kidney | 6.5 |
| Pancreas | 5.5 |
| Small intestine | 3.6 |
| Large intestine | 3.4 |
| Stomach | 4.8 |
| heart | 4.0 |
| ovary | 21.9 |
| cheek muscle | 6.6 |
Transcript
| Transcript ID | habu1_s1917_g07055.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07055.t1 gctgttctccttcgcgtcggcaccgaactagccatggcagcctcctcaatggagaaccagagccggaccgagcaggagca gagccgcggcccggtgctttcggagctgcagcgggagaagcggctggtgtgcgtggagttccccggcgtggtgcaggacg tgggcaagacgctgcagaccctggggggagaagaaggggtctcccggatctatgccgatcccagcaaaagactggagctg tatttccgtcccaaagacccctattgtcacccagtgtgtgccaatcgcttcccttcctcttccatgctgcttaaagtgaa aaagaaaacgaggcggaaacggacagaggaaggaggcctagaagaacaaaccaactttgaagtggagatacttggtgtca tttccaccctttataaatttcaaggtatgtccgatttccagtacttggtaatgcattcagagccggacggtaaacaaaca tccatgtatgacaaagtcttgatgctcaagccagaaaaagaagatttttttatgaatgagctaccactttatattcctcc acccattttctcacgcctggacactccgattgattattactatcggccagatgtgcatcatagggaaggctatcgcaatc ctcccctgtctagtgagaacctgattggcctcagccgggcacgccgtcctcacaacgccatctttgtcaactttgaggaa gaggaggtccccttcaagccgctggaggcggctgtgcagacttggaaaaaagtctgcagcaacgcggtggatcaccaagt agaaggggaactgaagaaactttttgaactgcgtcctgtctggtcccgcaatgcggtgaaagccaacatcagcgttcacc ccgacaagctgaaactgctcctaccctatttagcttattacatgctcacgggaccctggagaagcctctgggttcgtttt gggtacgaccccaggaagcacccggaagcaaagatttaccaggtcctggatttcagaattcgctgcggcatgaaatacgg atatgccccaaatgacatgccggtgaaggctaaacgcagcacctacaactacagtctgcctattactttaaaaaaaccag gaaatcacggcctgggcatccaagacttaaaacaggggctcagcacatctggaacatcgggtgcaaaatcaccagttatg agcaaatacaaacttaaggattccatttacacctttgaggaagggtcgctgcccccttatcgacagatgttctaccagct gtgcgatttgaaagtggaaagcttgcagaagatcatccatcgaaatgacgacgcggagacggcttgcacggagcgggacg gctggtgccttccgaagaccaacgatgagttgagggacaccatgtcactgatgataaggcagataatccgatcccaaagg ccagctctgttcagaaaccctagttccagtgccacggaaggcaaagagcaactgacttttgaatctggagaagaggagga ggaggaggaggaagaggttttcaagccttcggatgggagcgaaaatgaaatggagaccgaaattcttgactacgtctaat gccacggggctggtgggctggactggatcttggcggagggatttgttttgttcttttttggggggggaaggacagaagaa agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagacccaccaattggctgca ttgtatctttgatttgatggagtttgtgcagaagtatcatctgtaaattgcatcttacagatattgcatgttatttttca agctcagcaattgttccttgatgtagccttccttcaatcgctgtgttcagatgaaagataagagactctactttggggaa attccttcagcatctcagcattttttgccatccagggccaagcccatctacgtccaactttgtctactggagtctccttc tgcatcggcctctgtcgaacttccaagcacggcctgacgctatctcagaccttccacattggcaggcaaaattatcattt cattcctgctctgacttaatggttcctgtccttctcaaacaaaaagccatttggaatttcttcctcgtgaagccttgaga aaaatctcctgcgattcaattgtctggggttttgtgggacatcaaatggacagtctgaagagatttccactgttttgtac agatttccttttcagcttgagtgcaaataaaacccaagagttttgtgccttca |
|
Protein
| Protein ID | habu1_s1917_g07055.t1 |
|---|---|
| Definition | - |
>habu1_s1917_g07055.t1 MAASSMENQSRTEQEQSRGPVLSELQREKRLVCVEFPGVVQDVGKTLQTLGGEEGVSRIYADPSKRLELYFRPKDPYCHP VCANRFPSSSMLLKVKKKTRRKRTEEGGLEEQTNFEVEILGVISTLYKFQGMSDFQYLVMHSEPDGKQTSMYDKVLMLKP EKEDFFMNELPLYIPPPIFSRLDTPIDYYYRPDVHHREGYRNPPLSSENLIGLSRARRPHNAIFVNFEEEEVPFKPLEAA VQTWKKVCSNAVDHQVEGELKKLFELRPVWSRNAVKANISVHPDKLKLLLPYLAYYMLTGPWRSLWVRFGYDPRKHPEAK IYQVLDFRIRCGMKYGYAPNDMPVKAKRSTYNYSLPITLKKPGNHGLGIQDLKQGLSTSGTSGAKSPVMSKYKLKDSIYT FEEGSLPPYRQMFYQLCDLKVESLQKIIHRNDDAETACTERDGWCLPKTNDELRDTMSLMIRQIIRSQRPALFRNPSSSA TEGKEQLTFESGEEEEEEEEEVFKPSDGSENEMETEILDYV |
|