Gene
| Gene Model ID | habu1_s1961_g07126 |
|---|---|
| Locus | habu1_scaffold1961 : 160520 ... 170035 : - |
| To GenomeBrowser | habu1_scaffold1961:160520..170035 |
| Genes list of scaffold | habu1_scaffold1961 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 5-hydroxytryptamine receptor 3a | GO:0005230 GO:0016021 GO:0034220 GO:0045211 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1961_g07126.t1 | 1 | 1 | Neur_chan_LBD | 40 | 247 | 0.0 | 182.6 | 0.0 | 0.0 | 182.2 |
| habu1_s1961_g07126.t1 | 1 | 1 | Neur_chan_memb | 254 | 473 | 4.8e-31 | 108.4 | 1.7e-34 | 1.2e-30 | 107.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1961_g07126.t1 | gi|637344349|ref|XP_008117087.1| | PREDICTED: 5-hydroxytryptamine receptor 3A-like [Anolis carolinensis] | 0.0 |
| habu1_s1961_g07126.t1 | gi|602635533|ref|XP_007424632.1| | PREDICTED: LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 3A [Python bivittatus] | 0.0 |
| habu1_s1961_g07126.t1 | gi|641773855|ref|XP_008170567.1| | PREDICTED: 5-hydroxytryptamine receptor 3A [Chrysemys picta bellii] | 0.0 |
| habu1_s1961_g07126.t1 | gi|591371488|ref|XP_007060556.1| | PREDICTED: 5-hydroxytryptamine receptor 3A [Chelonia mydas] | 0.0 |
| habu1_s1961_g07126.t1 | gi|558211015|ref|XP_006133696.1| | PREDICTED: 5-hydroxytryptamine receptor 3A [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.0 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.0 |
| Brain-1 | 0.3 |
| Eye | 0.2 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 2.8 |
| Spleen | 0.0 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 0.0 |
| Pancreas | 0.0 |
| Small intestine | 0.1 |
| Large intestine | 0.0 |
| Stomach | 0.1 |
| heart | 0.0 |
| ovary | 0.1 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s1961_g07126.t1 |
|---|---|
| Definition | - |
>habu1_s1961_g07126.t1 aggaagacgaattaagctgtttccaccctcttggaagcattcatggctcgttctgccctgggggtctccctgctcctgct tgccgtggcttccatggtgcacagcaaagtttctcagaaaatacccagcaaagcgtccagctccagcaaggctgccctcc gccagctctccgattatttatttgccaattacaagaaggacgttcggccggtctggaactggaggaagaccaccaatgtg gccatcgacgtcatgatttatgccattctgagcgtggatgaaaaaaaccaagttctgaccacctatatttggtacaggca gcactggatcgatgaattcttgaaatggaatccagaggacttcgacaacatcacccagatgtccgtccccaccgaagcca tctgggtcccagatatcctgatcaacgaatttgtggatgtgggcaaatcccccgaaatcccctacgtctacatcctctat aatggggaagtgaggaatctcaagcctgtccaagtagtgaccgcctgcagcctggacatctacaacttccccttcgatgt acagaactgctctctgaccttcaccagttggctgcataacatacgagacatcaacctctccctatggaggaccccagagg aggtgaaaactgacaggagcgtcttcatgaaccagggcgaatgggagcttcttcatgtgctcagccagtttcgagagttc agtgtgggggacaatgattattatgctgagatgaagttctttgtggtcattcggaggcgtccccttttctatgctgtcag tctgctgctccccagtatctttctaatggttatggatattgtgggcttctacctgccccctgatagtggggaaagagttt cattcaagatcaccttgctccttggctactctgtcttcctaatcattgtgtccgacacgctgcctgcgactgctatcggg accccccttataggtatctattttgtggtttgcatggccttattggtcatcagcttgacagagaccatcctcattgtacg cctggtgcacaaacaggaccttcagccccatgttcctgactgggtgaagcgctgggttctggagcgggccaccatcctgc tctgcatccaagacaggaaagccttccaccccatctgcactcaaagttcaaacatctccaggaacatcgagaataacgac agcacagccaagctgaaccactacagctgtgaggccacacgtgactacgaaggcagaacaggggctgccacagaccccct gcagggcgagagcccagagtcggttgcgcatatcctacaggagattgcagccatccgccagttcctggagaagagagatg aattccgagatattgcccgcgagtggctgcaggtcggctacgttttggatgtcctcctcttccgtgcctacctggtggca gtgctggcctacagcatcacccttggcacgctgtggtccatctggcagtatgcctgacgcgcccaccttaccagagaagg gctcagcagaccaggcaccacgagcctttggcagatctttggagccactgaatgaatattggttaaacttttacgttctc cataaagtcccaaaccccagtctgtcttgctgaggggagagtaccagttattataagcctctttagttaggtttttctaa ggactttatgtcctttgcattttcttgtctttatttgtgtaatctctttgcaaagggaagttttggtcactgggaactat ttctttttcagtgaatttcagtccccaagatggataacagaaagtttaagtgtgttttaaagttgtgtgcaacagcattt atatactgtgtggctatttgcactagcattgtaaattggcctgtctgtaaaatgggcagctgcttttcttgctgtgcttc tatttgttctacaataaacaaaattaaactgaacacatcc |
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Protein
| Protein ID | habu1_s1961_g07126.t1 |
|---|---|
| Definition | - |
>habu1_s1961_g07126.t1 MARSALGVSLLLLAVASMVHSKVSQKIPSKASSSSKAALRQLSDYLFANYKKDVRPVWNWRKTTNVAIDVMIYAILSVDE KNQVLTTYIWYRQHWIDEFLKWNPEDFDNITQMSVPTEAIWVPDILINEFVDVGKSPEIPYVYILYNGEVRNLKPVQVVT ACSLDIYNFPFDVQNCSLTFTSWLHNIRDINLSLWRTPEEVKTDRSVFMNQGEWELLHVLSQFREFSVGDNDYYAEMKFF VVIRRRPLFYAVSLLLPSIFLMVMDIVGFYLPPDSGERVSFKITLLLGYSVFLIIVSDTLPATAIGTPLIGIYFVVCMAL LVISLTETILIVRLVHKQDLQPHVPDWVKRWVLERATILLCIQDRKAFHPICTQSSNISRNIENNDSTAKLNHYSCEATR DYEGRTGAATDPLQGESPESVAHILQEIAAIRQFLEKRDEFRDIAREWLQVGYVLDVLLFRAYLVAVLAYSITLGTLWSI WQYA |
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