Gene
| Gene Model ID | habu1_s1961_g07132 |
|---|---|
| Locus | habu1_scaffold1961 : 353457 ... 374898 : - |
| To GenomeBrowser | habu1_scaffold1961:353457..374898 |
| Genes list of scaffold | habu1_scaffold1961 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1961_g07132.t1 | 1 | 1 | TPR_11 | 107 | 172 | 7.3e-22 | 76.8 | 2.8e-20 | 2.8e-17 | 62.1 |
| habu1_s1961_g07132.t1 | 1 | 1 | TPR_12 | 140 | 207 | 1.7e-08 | 34.2 | 1.2e-09 | 1.2e-06 | 28.3 |
| habu1_s1961_g07132.t1 | 2 | 1 | TPR_1 | 144 | 174 | 3.2e-16 | 58.1 | 1.1e-08 | 1.1e-05 | 24.7 |
| habu1_s1961_g07132.t1 | 2 | 2 | TPR_1 | 177 | 208 | 3.2e-16 | 58.1 | 4.7e-09 | 4.6e-06 | 25.9 |
| habu1_s1961_g07132.t1 | 1 | 1 | TPR_2 | 177 | 208 | 4.1e-13 | 48.1 | 5.1e-09 | 5.1e-06 | 26.0 |
| habu1_s1961_g07132.t1 | 1 | 1 | TPR_8 | 177 | 208 | 1.8e-09 | 36.6 | 7.5e-07 | 0.00074 | 19.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1961_g07132.t1 | gi|602635545|ref|XP_007424638.1| | PREDICTED: tetratricopeptide repeat protein 12 [Python bivittatus] | 0.0 |
| habu1_s1961_g07132.t1 | gi|591371442|ref|XP_007060535.1| | PREDICTED: tetratricopeptide repeat protein 12 [Chelonia mydas] | 0.0 |
| habu1_s1961_g07132.t1 | gi|530595697|ref|XP_005291406.1| | PREDICTED: tetratricopeptide repeat protein 12 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s1961_g07132.t1 | gi|558107967|ref|XP_006111301.1| | PREDICTED: tetratricopeptide repeat protein 12 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s1961_g07132.t1 | gi|697469876|ref|XP_009668496.1| | PREDICTED: tetratricopeptide repeat protein 12 isoform X2 [Struthio camelus australis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.4 |
| Venom grand-1 | 0.6 |
| Pit, infrared sensing | 5.2 |
| Nose | 17.9 |
| Brain-1 | 2.5 |
| Eye | 1.1 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.1 |
| Brain-2 | 2.8 |
| Spleen | 0.2 |
| Lung | 3.0 |
| Liver | 0.4 |
| Kidney | 0.8 |
| Pancreas | 0.1 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.0 |
| ovary | 0.8 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s1961_g07132.t1 |
|---|---|
| Definition | - |
>habu1_s1961_g07132.t1 gtgcagctccgccccgcagccagccggggcccttccccagccgaggatgtcggggcggcgggaggagcgggagctgcagg gcttcctgcggaacgtggacgaagtcgcggccttgattgaaggcctgaagtccagcgatccagccatccaggaaaaagcc attgcagataccgagaagagactcgggtccatttcaggcaaagagggaaagaagccgaagcccaaagtggacaggacggt catcaacacgcagccttcaccggggttgccaagtcaagaggagacaatgaatccagagagcttcctggcggctttagaga aggatgcccacgagcgagccaggaggaggaaagaaaatgaagccttggcaaatgccctgaaagaccgagggaacgacgct ttcagcaaaggggactacgcttcagctgtgcaaaactacacagaaggcctgaagaagcaaaaggacgtgccagccttgta taccaaccgggcccaggcctacatcaagttgcggaagtacaagaaagccattagcgactgcagctgggcgttgaggtgcg atgaaaaatgcaccaaggctctcttccatatgggaaaggcccacctggccaaggagcagttccagcaggccagagagtgc tacctgaagattttagaaattgacccccagaaggagaagctgtgcaaagactgcatacataaaatagacctggaggaaaa aaaactctgtgaggaggagagagcagcagcagatttcaagtccgggaaactcaccgcagtcaccgtgaatgagatgcttc agaaactcagcaagccggatcaggaccctctttattatgcaggtggcattcggcttctgacggacctagttcaagcctgc accgagcaaactttatttaggacgaacggcggtttcagcgtcatctccgacaacaaggtcatagaacaggtcctcggtgc caagatcagctcgcctgccgaactggagctggttcgctccctgcttctcctctggcaagccgtctgcaaagggaacgagg agaaccagcggctgcttctaactcatcccgatgtgaatgcgcagcttcccgctttgctgtgctcggaggcgcctgaagtc caggaacagtgcatggctctgctgtctctcttcgcggagactgagcacgggaggatcctcctagtcagacatctgaacac caccaagtggctacagacattgatatccttagttaacgttgctgacagcagagctgccagcgcaatgaatttgctgaccc acttaatcctggaagaaaacttcaaaatccagtgccgtattaaactgtccacagaggccttgccaatcttttctcaattg ctgagctcttccaagcccttgaaggagacggtccttagccagtgcattgccctcatgggagacctctgctcagacgtggt catccggatgcagatgaccgaaaatcaggaatgctggcaagcttgcttgagcttcgtgaatcaatgctggaccgaaaaca gcgtcgccagatatcccgagtgtttgcatgcagtcctaggcctaatgatgaacctctccctggaacccaactcagtcatc gaggaacttgcagaggaaatctgtgacatgtgtatgtctctcttcaacagtccagacgggaggatcatcacaagagccgt ggggcttttgagtcacgtcctgccggcaagtctggtggctctggaagaagctgtgagacaagacgtggtgaggaaagcga tccgattcctgaaggctggtgggcaaaccacgactggttatgccatgaaggtccttgccatttgtgccaagaatagtcgg ctggctctgacgcagattgtgaaactggataagaaatgcagcctgttgctgaagcttctgtcctggccgaatgagggggt ggcaggcaacgctgctttctgcctggagaaatgtctggaggtgcctggcacagccaccaatttgctggacacggatgtgg tcagaatcctcttgagagtcaccacagggagtgcccaaagggcttccgtgcaagacaatgcagccatcgccttagggagg ctctgtgcagctgatgccaggcacaccagccggctgcgggagctgaacggaatggcggccctgagcgcttccgtcaggaa gatgcaaggctattagggtgccagcagatggtccagagagggtttctgtggccagccctgtctctggttggaattgtgct ttctttttacaataaagaggattaaaaacagggtggggcagggggagagagagggtcataaaaatatcaaatataataaa tcgcttggaactgtgcctggattaaagtgttttcctgagtttgttcct |
|
Protein
| Protein ID | habu1_s1961_g07132.t1 |
|---|---|
| Definition | - |
>habu1_s1961_g07132.t1 MSGRREERELQGFLRNVDEVAALIEGLKSSDPAIQEKAIADTEKRLGSISGKEGKKPKPKVDRTVINTQPSPGLPSQEET MNPESFLAALEKDAHERARRRKENEALANALKDRGNDAFSKGDYASAVQNYTEGLKKQKDVPALYTNRAQAYIKLRKYKK AISDCSWALRCDEKCTKALFHMGKAHLAKEQFQQARECYLKILEIDPQKEKLCKDCIHKIDLEEKKLCEEERAAADFKSG KLTAVTVNEMLQKLSKPDQDPLYYAGGIRLLTDLVQACTEQTLFRTNGGFSVISDNKVIEQVLGAKISSPAELELVRSLL LLWQAVCKGNEENQRLLLTHPDVNAQLPALLCSEAPEVQEQCMALLSLFAETEHGRILLVRHLNTTKWLQTLISLVNVAD SRAASAMNLLTHLILEENFKIQCRIKLSTEALPIFSQLLSSSKPLKETVLSQCIALMGDLCSDVVIRMQMTENQECWQAC LSFVNQCWTENSVARYPECLHAVLGLMMNLSLEPNSVIEELAEEICDMCMSLFNSPDGRIITRAVGLLSHVLPASLVALE EAVRQDVVRKAIRFLKAGGQTTTGYAMKVLAICAKNSRLALTQIVKLDKKCSLLLKLLSWPNEGVAGNAAFCLEKCLEVP GTATNLLDTDVVRILLRVTTGSAQRASVQDNAAIALGRLCAADARHTSRLRELNGMAALSASVRKMQGY |
|