Gene
| Gene Model ID | habu1_s1961_g07162 |
|---|---|
| Locus | habu1_scaffold1961 : 1274896 ... 1277388 : + |
| To GenomeBrowser | habu1_scaffold1961:1274896..1277388 |
| Genes list of scaffold | habu1_scaffold1961 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ring finger protein 26 | GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1961_g07162.t1 | 1 | 1 | zf-C3HC4_3 | 421 | 470 | 1.2e-13 | 50.5 | 5.4e-17 | 1.2e-13 | 50.5 |
| habu1_s1961_g07162.t1 | 1 | 1 | zf-RING_2 | 423 | 466 | 5.1e-06 | 26.2 | 6.3e-09 | 1.3e-05 | 24.8 |
| habu1_s1961_g07162.t1 | 1 | 1 | zf-C3HC4_2 | 424 | 465 | 3.0e-06 | 27.1 | 1.4e-09 | 3.0e-06 | 27.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1961_g07162.t1 | gi|602671455|ref|XP_007441240.1| | PREDICTED: RING finger protein 26 [Python bivittatus] | 0.0 |
| habu1_s1961_g07162.t1 | gi|530633644|ref|XP_005303829.1| | PREDICTED: RING finger protein 26 [Chrysemys picta bellii] | 0.0 |
| habu1_s1961_g07162.t1 | gi|591385118|ref|XP_007067008.1| | PREDICTED: RING finger protein 26 [Chelonia mydas] | 0.0 |
| habu1_s1961_g07162.t1 | gi|558107762|ref|XP_006111260.1| | PREDICTED: RING finger protein 26 [Pelodiscus sinensis] | 0.0 |
| habu1_s1961_g07162.t1 | gi|564227485|ref|XP_006258207.1| | PREDICTED: RING finger protein 26 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.3 |
| Venom grand-1 | 1.0 |
| Pit, infrared sensing | 1.2 |
| Nose | 1.2 |
| Brain-1 | 0.8 |
| Eye | 0.7 |
| fetal fibroblast | 3.5 |
| venom gland-2 | 1.5 |
| Brain-2 | 0.9 |
| Spleen | 0.8 |
| Lung | 1.6 |
| Liver | 2.0 |
| Kidney | 1.5 |
| Pancreas | 0.5 |
| Small intestine | 0.8 |
| Large intestine | 0.8 |
| Stomach | 0.6 |
| heart | 1.0 |
| ovary | 7.3 |
| cheek muscle | 0.7 |
Transcript
| Transcript ID | habu1_s1961_g07162.t1 |
|---|---|
| Definition | - |
>habu1_s1961_g07162.t1 gtttgccctcgctgattggccgccgaggcgcccgctccccccaagatggcggcgcccagcagaagggaggagagcgcttg ttggcttcagctggttcttgtcttggccgattcttcgagagctcagctatggatctagtgttcctggtgatcaacggcat ggggatggtgttggatctgctggtcatcctgctggatatcaacttcttcctcgtttccaccgccctctcagccttgatct ggcttatcgcctttgtttacaatctgcccaatgccacggtagcctgtctgagccagttctggaatgggatcttggtcgtt gtgctatgtatcctggaggcgttgtactacttgactctgggctctgtgcacgcagtcctcaacttgttgagaggattctg ctccagcatggagagtttgaaagtgctgggccacctgttcacccacctgggcctgagaagcaaagaaattgtgcaccgag gtttctggaacctgattggctctggtcagacgcttctgagacagatgtgtgaagtgtgcgccatagctatgagccttgtg gcttacttcatcaacagcataatcaacatctgcctcattggaactcagaacctttttgcagtagggctggccctgtggga tactatagttggcccctttctgaggatcacagacctcctggttgccttccttgcacgcctctccagcagtgccattgcta cggccattctcctgtggactccctgtcagttggctgttgatctcctggcctcagtgagcaagctgctgatcaacgtcttc tttgtcaacctgtatggcatggtgttgctctctgtgatgcttgccatcagcatctttatcctgaacccacagctgacttg gacagtggcaaaccaagtggctggctatttgaacacgatgccttcctaccatcgcttgctcagggacatgcaacgccttt atcacatcatgctcctgtccctggagatgctgctgagctcccagacctggcgtaggttggcagactggggccttcaggtg ctcagttggaacaggaacatctgggcagctaaccagcacggagaacaagaaccgcagctggtgcttgaagctccccaaga aagagcagggggagctgctgtgggacagagactggctccacaagaaccatatccacgaagacaagggccaacggtgatca tacgtccccgccaaagaggcagcagggaccagactagaatggacaatgatctgggaacagccacacaacagtttcagcct cagggggaaggaccaagtgtatcccagaccaaaacagcaaaaaaagagcaactaaatggtttggaagaagacaatgaccc gtggcggcttcttaaagaacaagaagaacggaagaaatgtgtcatttgccaggatcaaaccaagacagtcctcttactgc cctgccggcacctttgcctgtgccaagaatgcactgagatcctgctgcagcaggccatctaccaacggaactgccctctg tgcagacagatgatcttgcagactctcaacgtctatctgtgagctccggaggaagcagcttgatctccttcccacgtgct ttttgccaaagcacaagaggtctctggcccttggacctctgtaacagctggtaatggctcttggtgtccacactgagtac ccccccccttttttttttaatttccagggacagtaattgcagttagcggaacctgaaaaatgctatgaattgttt |
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Protein
| Protein ID | habu1_s1961_g07162.t1 |
|---|---|
| Definition | - |
>habu1_s1961_g07162.t1 MDLVFLVINGMGMVLDLLVILLDINFFLVSTALSALIWLIAFVYNLPNATVACLSQFWNGILVVVLCILEALYYLTLGSV HAVLNLLRGFCSSMESLKVLGHLFTHLGLRSKEIVHRGFWNLIGSGQTLLRQMCEVCAIAMSLVAYFINSIINICLIGTQ NLFAVGLALWDTIVGPFLRITDLLVAFLARLSSSAIATAILLWTPCQLAVDLLASVSKLLINVFFVNLYGMVLLSVMLAI SIFILNPQLTWTVANQVAGYLNTMPSYHRLLRDMQRLYHIMLLSLEMLLSSQTWRRLADWGLQVLSWNRNIWAANQHGEQ EPQLVLEAPQERAGGAAVGQRLAPQEPYPRRQGPTVIIRPRQRGSRDQTRMDNDLGTATQQFQPQGEGPSVSQTKTAKKE QLNGLEEDNDPWRLLKEQEERKKCVICQDQTKTVLLLPCRHLCLCQECTEILLQQAIYQRNCPLCRQMILQTLNVYL |
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