Gene
| Gene Model ID | habu1_s1961_g07163 |
|---|---|
| Locus | habu1_scaffold1961 : 1290286 ... 1295605 : - |
| To GenomeBrowser | habu1_scaffold1961:1290286..1295605 |
| Genes list of scaffold | habu1_scaffold1961 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| complement c1q tumor necrosis factor-related protein 5 | GO:0005581 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1961_g07163.t1 | 2 | 1 | Collagen | 32 | 75 | 2.3e-15 | 55.8 | 2.2e-11 | 1.7e-07 | 30.7 |
| habu1_s1961_g07163.t1 | 2 | 2 | Collagen | 44 | 99 | 2.3e-15 | 55.8 | 9.6e-14 | 7.1e-10 | 38.2 |
| habu1_s1961_g07163.t1 | 1 | 1 | C1q | 107 | 234 | 5.1e-34 | 117.0 | 8.5e-38 | 6.3e-34 | 116.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1961_g07163.t1 | gi|558107754|ref|XP_006111259.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 5 [Pelodiscus sinensis] | 0.0 |
| habu1_s1961_g07163.t1 | gi|602671453|ref|XP_007441239.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 5 [Python bivittatus] | 0.0 |
| habu1_s1961_g07163.t1 | gi|327288829|ref|XP_003229127.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 5 [Anolis carolinensis] | 0.0 |
| habu1_s1961_g07163.t1 | gi|591385120|ref|XP_007067009.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 5 [Chelonia mydas] | 0.0 |
| habu1_s1961_g07163.t1 | gi|530633642|ref|XP_005303828.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 5 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 24.7 |
| Venom grand-1 | 1.5 |
| Pit, infrared sensing | 11.7 |
| Nose | 6.1 |
| Brain-1 | 9.4 |
| Eye | 4.0 |
| fetal fibroblast | 2.3 |
| venom gland-2 | 1.5 |
| Brain-2 | 5.0 |
| Spleen | 2.1 |
| Lung | 3.5 |
| Liver | 1.4 |
| Kidney | 4.0 |
| Pancreas | 1.1 |
| Small intestine | 0.9 |
| Large intestine | 1.8 |
| Stomach | 1.3 |
| heart | 8.9 |
| ovary | 0.5 |
| cheek muscle | 1.4 |
Transcript
| Transcript ID | habu1_s1961_g07163.t1 |
|---|---|
| Definition | - |
>habu1_s1961_g07163.t1 cccggggagaagcaaggagagaaaagccccaaagggaaaccaggcctcaggaacatggagcagatgctctcccactttct tttcttcctcgccctggccaaggaggcggctcatttggaagacaacaagatccccagcttgtgtgcagggcagccgggtc tccccgggacccctggaactcacggccaccagggtttgcccggccgggacggtcgtgatggacgagatggggctgcaggc ctgcagggagagaagggcgaaattggccatccaggactgacaggcccccgaggggagccaggcagccctggcaccaacgg gctcctgggagagaagggggcccagggggagtgtgcagttgcgccccgttcggccttcagtgccaagcgctccgagtccc gcagtccccctctgcccgacgagcccatcgtctttgacatcgtcctgattaatgagcaaggccactacaatagcaacacc ggcaagttcctctgcgaaatcccagggctctactactttgccgtgcacgccaccgtctaccggatgagcctccagttcga catcatgaagaacggcaagtcggtcgcttccttcttccaattttacggcaactggcccaagccgacgtccctgtccggag gcagcctggtgcggctggagccagaggatgaggtctgggtgcaggtggcggtgggcgagtacaccggcttctactccagt gtgaaaactgacagcatcttcacagggttcctcgtgtactcctactggcaaaactcccccgtctttgcttgagaggcagc ccaggaaaagctggcatcctgacctctcacatcgtgccctggtttgcatcaacagccccaggtcccttcctggcctgcgg gtacaacaccctttagctgaccccattgagaccaggagattcgggggggacaggtttccgttaattccaggtggcctggg gcaccgcagagaagccagtacttttctccagcatcaccttgatacagatagtccttgacttaccaccagtggtgggattc agccagtttgcatcagttcggtagaactggtagttaaattttgctgcattcggagaaccggctggtttccagaagtccag tctaggcctcggaggcctgaaggaggcctcccaggcctagaatggtccaccagaagtgcatggatgccacttccggaaat ccgttctagacctgggaagcccaggcctgcatcgaataagagaaccggttgttcaggtatttgaattccaccactgctta ccaccaccatttccattgctaagcaaagcggttgtgaagtggctccattttacagccatttgtgtcaccgttgtttagca atcactgcaggcctaaatggttcatgcaaatcgggcttctcccattttactttgttagaaactggctaggaaggtgatcg gatgtccctgggatgctgtgactgttgcaaatacatgccagttgtaagtcactttctttggtgctgttgtaaccgtcgct acgcaaatggttgtaagtcgagggctctcttgtaaaggaagggagctccatcccatttctttcttccgacctcagaagcc ctccaaagggtggagctgatactttcagcccattcttcggctttctccattaaaagcaaaagaggtttaatttcca |
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Protein
| Protein ID | habu1_s1961_g07163.t1 |
|---|---|
| Definition | - |
>habu1_s1961_g07163.t1 MEQMLSHFLFFLALAKEAAHLEDNKIPSLCAGQPGLPGTPGTHGHQGLPGRDGRDGRDGAAGLQGEKGEIGHPGLTGPRG EPGSPGTNGLLGEKGAQGECAVAPRSAFSAKRSESRSPPLPDEPIVFDIVLINEQGHYNSNTGKFLCEIPGLYYFAVHAT VYRMSLQFDIMKNGKSVASFFQFYGNWPKPTSLSGGSLVRLEPEDEVWVQVAVGEYTGFYSSVKTDSIFTGFLVYSYWQN SPVFA |
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