Gene
| Gene Model ID | habu1_s1966_g07214 |
|---|---|
| Locus | habu1_scaffold1966 : 67586 ... 85070 : + |
| To GenomeBrowser | habu1_scaffold1966:67586..85070 |
| Genes list of scaffold | habu1_scaffold1966 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sin3 histone deacetylase corepressor complex component sds3 | GO:0000122 GO:0004407 GO:0005737 GO:0005886 GO:0016575 GO:0016580 GO:0021762 GO:0042803 GO:0042826 GO:0043065 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1966_g07214.t2 | 1 | 1 | Sds3 | 90 | 251 | 2.4e-26 | 92.5 | 1.5e-29 | 3.8e-26 | 91.9 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.0 |
| Venom grand-1 | 5.5 |
| Pit, infrared sensing | 5.3 |
| Nose | 4.2 |
| Brain-1 | 3.3 |
| Eye | 3.9 |
| fetal fibroblast | 10.3 |
| venom gland-2 | 5.8 |
| Brain-2 | 3.4 |
| Spleen | 4.3 |
| Lung | 4.2 |
| Liver | 5.5 |
| Kidney | 4.6 |
| Pancreas | 3.1 |
| Small intestine | 6.5 |
| Large intestine | 5.4 |
| Stomach | 3.4 |
| heart | 3.8 |
| ovary | 37.1 |
| cheek muscle | 5.3 |
Transcript
| Transcript ID | habu1_s1966_g07214.t1 |
|---|---|
| Definition | - |
>habu1_s1966_g07214.t1 ctgcgcggggaaggagcgcgcttctgtgagcgctcgcctgccgccgccgccgcggatcggagggacgaggcgcgccttgc ttcgcgggccatgagcgccgccgccgccgccgccgcgctggtttcccccgcgctgcccccggggccgccgctgccgccgc cgcccgcagcttccacgctgcccccgggggccggagccgtcgcgatcgccgccgctgccgccgccgccgccgccgagagc tatggggaggaggacctggacagcccccccgaggaggaggacggcgagcgcagcggacgcgcgcgggactccgacgagga tacggaagatgccagcgaaactgatctggcgaaacacgatgaggaagattacgtagaaatgaaggaacagatgtaccagg ataaattggcatcgctaaaaaaacagctgcagcaactacaggaaggtaccttacaagaatatcaaaagaggatgaagaag ctggatcagcaatataaagagaggattcgcaatgcagagctttttcttcagttggaaacagagcaggtggaacgaaacta catcaaagagaagaaagcagcagtgaaggagtttgaggataagaaaatcgagctgaaggagagcttgatcgcggaattgg aagagaagaaaaagatgattgagagtgagaagctcaccatggaactgacaggagattccatggaagtgaagccgatcatg acaaggaaattgcggaggaggccgaacgatcccgtccccattcctgacaaaaggaggaaaccagctccagctcagctcaa ttatctcctaacagatgaacagataatggaagatttgaggaccctgaataagcttaagtcacctaaaagaccagtcttct tttctgttccagcgtctccttcctcgcccgagcaccttccgacgacgcccgcagaatccccagcccaacggtttgaggca cggatagaagacgggaagctgtactacgataaacgatggtatcacaagagccaggctatttacctggaatcgaaagagaa caccaaaatcagctgtgtgatcagctcggtgggagccaacgagatctggaatgcaaagatgcttcgaagcttgacactct tgaatctgttccttaacatcaagataatgcagtccttctcaccttagtttcacgatacactttagaaaaaacgaccggct tgaattcctcctacatctggtacccaaactgaatcagagtgatacaactgactgtatgaaaaattaacggttgagaagat ccatcataaaagcaggtgagaaattgttttct |
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| Transcript ID | habu1_s1966_g07214.t2 |
| Definition | - |
>habu1_s1966_g07214.t2 ctgcgcggggaaggagcgcgcttctgtgagcgctcgcctgccgccgccgccgcggatcggagggacgaggcgcgccttgc ttcgcgggccatgagcgccgccgccgccgccgccgcgctggtttcccccgcgctgcccccggggccgccgctgccgccgc cgcccgcagcttccacgctgcccccgggggccggagccgtcgcgatcgccgccgctgccgccgccgccgccgccgagagc tatggggaggaggacctggacagcccccccgaggaggaggacggcgagcgcagcggacgcgcgcgggactccgacgagga tacggaagatgccagcgaaactgatctggcgaaacacgatgaggaagattacgtagaaatgaaggaacagatgtaccagg ataaattggcatcgctaaaaaaacagctgcagcaactacaggaaggtaccttacaagaatatcaaaagaggatgaagaag ctggatcagcaatataaagagaggattcgcaatgcagagctttttcttcagttggaaacagagcaggtggaacgaaacta catcaaagagaagaaagcagcagtgaaggagtttgaggataagaaaatcgagctgaaggagagcttgatcgcggaattgg aagagaagaaaaagatgattgagagtgagaagctcaccatggaactgacaggagattccatggaagtgaagccgatcatg acaaggaaattgcggaggaggccgaacgatcccgtccccattcctgacaaaaggaggaaaccagctccagctcagctcaa ttatctcctaacagatgaacagataatggaagatttgaggaccctgaataagcttaagtcacctaaaagaccagcgtctc cttcctcgcccgagcaccttccgacgacgcccgcagaatccccagcccaacggtttgaggcacggatagaagacgggaag ctgtactacgataaacgatggtatcacaagagccaggctatttacctggaatcgaaagagaacaccaaaatcagctgtgt gatcagctcggtgggagccaacgagatctggaatgcaaagatgcttcgaagcttgacactcttgaatctgttccttaaca tcaagataatgcagtccttctcaccttagtttcacgatacactttagaaaaaacgaccggcttgaattcctcctacatct ggtacccaaactgaatcagagtgatacaactgactgtatgaaaaattaacggttgagaagatccatcataaaagcaggtg agaaattgttttct |
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Protein
| Protein ID | habu1_s1966_g07214.t1 |
|---|---|
| Definition | - |
>habu1_s1966_g07214.t1 MSAAAAAAALVSPALPPGPPLPPPPAASTLPPGAGAVAIAAAAAAAAAESYGEEDLDSPPEEEDGERSGRARDSDEDTED ASETDLAKHDEEDYVEMKEQMYQDKLASLKKQLQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLETEQVERNYIKE KKAAVKEFEDKKIELKESLIAELEEKKKMIESEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLL TDEQIMEDLRTLNKLKSPKRPVFFSVPASPSSPEHLPTTPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKENTKI SCVISSVGANEIWNAKMLRSLTLLNLFLNIKIMQSFSP |
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| Protein ID | habu1_s1966_g07214.t2 |
| Definition | - |
>habu1_s1966_g07214.t2 MSAAAAAAALVSPALPPGPPLPPPPAASTLPPGAGAVAIAAAAAAAAAESYGEEDLDSPPEEEDGERSGRARDSDEDTED ASETDLAKHDEEDYVEMKEQMYQDKLASLKKQLQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLETEQVERNYIKE KKAAVKEFEDKKIELKESLIAELEEKKKMIESEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLL TDEQIMEDLRTLNKLKSPKRPASPSSPEHLPTTPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKENTKISCVISS VGANEIWNAKMLRSLTLLNLFLNIKIMQSFSP |
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