Gene
| Gene Model ID | habu1_s1966_g07217 |
|---|---|
| Locus | habu1_scaffold1966 : 128086 ... 188676 : + |
| To GenomeBrowser | habu1_scaffold1966:128086..188676 |
| Genes list of scaffold | habu1_scaffold1966 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| heat shock protein beta-8 | GO:0005634 GO:0005737 GO:0042802 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1966_g07217.t1 | 1 | 1 | SRRM_C | 473 | 530 | 1.7e-15 | 56.8 | 3.3e-19 | 1.7e-15 | 56.8 |
| habu1_s1966_g07217.t1 | 1 | 1 | HSP20 | 684 | 762 | 3.5e-17 | 62.1 | 2.5e-20 | 1.2e-16 | 60.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1966_g07217.t1 | gi|327282670|ref|XP_003226065.1| | PREDICTED: heat shock protein beta-8 [Anolis carolinensis] | 0.0 |
| habu1_s1966_g07217.t1 | gi|557289594|ref|XP_006027432.1| | PREDICTED: heat shock protein beta-8 [Alligator sinensis] | 0.0 |
| habu1_s1966_g07217.t1 | gi|530627601|ref|XP_005303313.1| | PREDICTED: heat shock protein beta-8 [Chrysemys picta bellii] | 0.0 |
| habu1_s1966_g07217.t1 | gi|564248507|ref|XP_006263342.1| | PREDICTED: heat shock protein beta-8-like [Alligator mississippiensis] | 0.0 |
| habu1_s1966_g07217.t1 | gi|558213539|ref|XP_006134230.1| | PREDICTED: heat shock protein beta-8 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 8.5 |
| Venom grand-1 | 23.9 |
| Pit, infrared sensing | 7.7 |
| Nose | 13.3 |
| Brain-1 | 5.5 |
| Eye | 10.1 |
| fetal fibroblast | 6.8 |
| venom gland-2 | 7.0 |
| Brain-2 | 6.4 |
| Spleen | 2.3 |
| Lung | 6.1 |
| Liver | 5.5 |
| Kidney | 5.9 |
| Pancreas | 3.0 |
| Small intestine | 18.6 |
| Large intestine | 13.1 |
| Stomach | 6.2 |
| heart | 12.3 |
| ovary | 11.9 |
| cheek muscle | 191.1 |
Transcript
| Transcript ID | habu1_s1966_g07217.t1 |
|---|---|
| Definition | - |
>habu1_s1966_g07217.t1 gccagaagatgctcaaatgcttgcagagagcgatgggaaacgcccgcgggcaggaaaagccaaatgcctcgttggggtga atcacatcactgcaaatttgacaagaagctcacaagaggggatcacgtgatccagggacactgtgactgtcataaacggg agtcagttgccaagcgtccgaattttgatcacgtgaccctggagatgctgcaacggtccactgatgcccgcagctgcctg cctcttccaacagaagtcaccccttccggagaatcacacccagctggagaaacccgcaacgtcaacggttgtgagaggca gaagaacagcctggaagacaacacacaaaaatcacgcagtccctcttgggatgctgaatcttccccacctccatccaagg gaaagaaaaagaagaaaaaatcagcaaggaagaaaagaaggagatctccctcctacagtgtttctcctccaaagaagaag aagaaaaagaagagttcaaagaaaaggaaaagaaacaggatatcttcaaagaagaaaagacacagttcatccagccccaa gagaaaaaggaaggagggaaggaaacacaaaaagcgctctcatagccgtccacagaaatccaggcgccatcgttaccgtt ctagttcaaacagcaccaattctcaatcggagagctgtggaagccgacataggctgagaagccgattccaagatgaaggc aataaagggagacccggccgatcacggcatgcatcaaagaggactactcactccgatgaagcaggagagttggctgggag ccccttcctgggctgcaccctgcagaacaattactttctctccacggctgaacttatctcaaattctgggtctgcgactg gcctctttaaaaaagcaaccggccagttggggaaccaaagcaaagagaccggagatgcccacgaatatgactcgggcaac gcaacttcttcccccccgtctgttcagacaaacacatccaggtcaaaaggcagccaagaaaccgagggcgaagtccgtgt tggcttcggccaggccttctcttcggggaaagccagcagtgtcagcagccctgattcggggaactcacttcacagctatc gctcccaatcaaaaggaccggctttggaagagccaaatccgtcccccgggcatctgtgcaaagatcaaaatggagggtct tggccctctcttgagcctcttggaaagaagaaggccaacattatctcgccaccgttttccagttctccacttcagccatg tcttcgaaatgagtctccttccagcaggtcatctctggactctgaatctttgcatcacaagctggggcagagatcttcac caagtccgtcttgttgctcgtcaaaatcaagattctcttcccgttcccctagttcctccctcaaatcctgcaagagaaca gctggaagcagaaattcaagatcccaacgcagccccagctattctcggtatagggctggcagaggtcgtgaagaagatca cagttacggctccagtgggaaggagtcccacaggcatcaggaccgccggcggcgcaaagagtgctattcccccatgagga agcgtcggagagattctcccagccacttggaagcccggcggataaccaggatggaattgaaggacgttgtaggccaagca cgaaacaagatgaattttggggtgtgcaagctcagtgggttgatggagaagacccacccagaagatgtccctggtccttc tacagaaatggaaaggagctccttggctgtcgaatattgttggatggctgacaaccagatccctttctcgtgctaccctg gccggcatcggaatctcagagatcccttcagggaatccagcttgtcctctcggcttctggacgatgactttaacatgtct ccttttcccggcgacctgaccgccaactggccggattgggcccgctcgcccctgaccgcaggctgggcgagtccactgag gtcagggatggtccggagcagcggattctcccctccggggtacggctctcgctttggggctcaccctgaaggggatccct ttggatccagcccaccgaccttctcgggagagccctggaaagtgtgcgtcaacgtccagagttttaaacccgaagagctc tcggtcaagaccaaggatggttacgtggaagtgtcaggtaaacatgaagaacaacaagcagaaggagggattgtttccaa gaatttcaccaagaaaatacagcttccggtggaagtggaccccaccacggtctttgcctccatgtctcccgaagggctgc tgatcatcgaagctccacagatacctccatattgtcagtacggggatggcagctatggcaacgagattcctttggacagc caagaagccacctgtgcctgaaggaggtcctgcccgaggctctctctcccccacaaagtcccttccatcagctgccttca ttcaaagtcttcttccttgtagatgtcctggtcaaccctactcttgagtggacttcttgagctcccacgttacactcggg gtggaggggagatgggtaatgttaacctggtctttgaggctttcaaatcagtggtataaaattatacacctcggcggtgc cctctctcaaacaggagtgatgttgagtcagaaggattcagttccagaaagcttctttgatccaccacatttggggtggg gggagacctcttctgaaaggttttgaggaagtgttgaagtcaagattggtcctttagatgtttctggataaagatttaga actgagacaaatcctgaagaaaggaatcccttggcaatgtgacttcaagaggaagtcgctgctgtgtcaacttagcggca atgttgtctacatttcccaccatgcctggtgtcggcattgcattggggcattgtgggaaatgaacaggctagcctccaca actttccaagccaggacttcttcattgtatgagggagctacaacaatctttggtcctgtggagaagtatttaaggactca ttcaccatctagttttcattgaatccatgttcagaaaggctcaaaggtcccacacccatcattctgatctaagccccttt gtggcttgcttcatcatctcaccaataaagatcccaaccttgaaacaagga |
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Protein
| Protein ID | habu1_s1966_g07217.t1 |
|---|---|
| Definition | - |
>habu1_s1966_g07217.t1 MPRWGESHHCKFDKKLTRGDHVIQGHCDCHKRESVAKRPNFDHVTLEMLQRSTDARSCLPLPTEVTPSGESHPAGETRNV NGCERQKNSLEDNTQKSRSPSWDAESSPPPSKGKKKKKKSARKKRRRSPSYSVSPPKKKKKKKSSKKRKRNRISSKKKRH SSSSPKRKRKEGRKHKKRSHSRPQKSRRHRYRSSSNSTNSQSESCGSRHRLRSRFQDEGNKGRPGRSRHASKRTTHSDEA GELAGSPFLGCTLQNNYFLSTAELISNSGSATGLFKKATGQLGNQSKETGDAHEYDSGNATSSPPSVQTNTSRSKGSQET EGEVRVGFGQAFSSGKASSVSSPDSGNSLHSYRSQSKGPALEEPNPSPGHLCKDQNGGSWPSLEPLGKKKANIISPPFSS SPLQPCLRNESPSSRSSLDSESLHHKLGQRSSPSPSCCSSKSRFSSRSPSSSLKSCKRTAGSRNSRSQRSPSYSRYRAGR GREEDHSYGSSGKESHRHQDRRRRKECYSPMRKRRRDSPSHLEARRITRMELKDVVGQARNKMNFGVCKLSGLMEKTHPE DVPGPSTEMERSSLAVEYCWMADNQIPFSCYPGRHRNLRDPFRESSLSSRLLDDDFNMSPFPGDLTANWPDWARSPLTAG WASPLRSGMVRSSGFSPPGYGSRFGAHPEGDPFGSSPPTFSGEPWKVCVNVQSFKPEELSVKTKDGYVEVSGKHEEQQAE GGIVSKNFTKKIQLPVEVDPTTVFASMSPEGLLIIEAPQIPPYCQYGDGSYGNEIPLDSQEATCA |
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