Gene
| Gene Model ID | habu1_s1966_g07220 |
|---|---|
| Locus | habu1_scaffold1966 : 257705 ... 261635 : - |
| To GenomeBrowser | habu1_scaffold1966:257705..261635 |
| Genes list of scaffold | habu1_scaffold1966 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 60s acidic ribosomal protein partial | GO:0005840 GO:0042254 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s1966_g07220.t1 | 1 | 1 | Ribosomal_L10 | 8 | 104 | 1.8e-23 | 82.3 | 5.8e-27 | 4.3e-23 | 81.1 |
| habu1_s1966_g07220.t1 | 1 | 1 | Ribosomal_60s | 231 | 314 | 8.3e-20 | 70.9 | 1.1e-23 | 8.3e-20 | 70.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s1966_g07220.t1 | gi|602657167|ref|XP_007434308.1| | PREDICTED: 60S acidic ribosomal protein P0-like isoform X1 [Python bivittatus] | 0.0 |
| habu1_s1966_g07220.t1 | gi|675421023|ref|XP_008924020.1| | PREDICTED: 60S acidic ribosomal protein P0 [Manacus vitellinus] | 0.0 |
| habu1_s1966_g07220.t1 | gi|663288952|ref|XP_008501040.1| | PREDICTED: 60S acidic ribosomal protein P0 [Calypte anna] | 0.0 |
| habu1_s1966_g07220.t1 | gi|224071968|ref|XP_002199561.1| | PREDICTED: 60S acidic ribosomal protein P0 [Taeniopygia guttata] | 0.0 |
| habu1_s1966_g07220.t1 | gi|543362217|ref|XP_005524479.1| | PREDICTED: 60S acidic ribosomal protein P0 [Pseudopodoces humilis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 933.6 |
| Venom grand-1 | 2134.2 |
| Pit, infrared sensing | 1547.5 |
| Nose | 894.9 |
| Brain-1 | 147.2 |
| Eye | 698.9 |
| fetal fibroblast | 1669.9 |
| venom gland-2 | 1982.7 |
| Brain-2 | 97.5 |
| Spleen | 1163.8 |
| Lung | 645.7 |
| Liver | 2586.9 |
| Kidney | 1537.6 |
| Pancreas | 1774.7 |
| Small intestine | 2364.7 |
| Large intestine | 1166.8 |
| Stomach | 1352.0 |
| heart | 662.5 |
| ovary | 569.4 |
| cheek muscle | 966.9 |
Transcript
| Transcript ID | habu1_s1966_g07220.t1 |
|---|---|
| Definition | - |
>habu1_s1966_g07220.t1 ccctttcttccacggaggcctcgtgagagaacgccgcttgtctttaaaccgccgccccgccgcgcgatccttgggtcacc gcgatgcccagggaagaccgagccacgtggaagtccaactacttcctcaagatcatccaactcctggacgattatccaaa atgtttcatcgtgggagcagacaacgtcggctccaagcagatgcagcagatccggatgtccctgcgcgggaaggccgttg tcctcatgggaaagaacaccatgatgcgtaaggccatccggggccatctggaaaacaaccctgctctggaaaagctgctg ccgcatattcgtggaaatgtgggctttgtgttcaccaaggaggatctgacagaaatcagggatatgctgcttgccaacaa ggtaccagctgctgcccgggctggagcaattgctccctgtgatgtcattgtgccagctcaaaacactggcctgggtcccg aaaagacctcctttttccaggctttaggcatcaccaccaaaatctccagaggcacgattgaaatcttgagtgacgtgcag ctgatcaaaactggagacaaagtgggtgccagcgaagccactctgctgaacatgttgaatatctcgcccttctccttcgg gctcatcatccagcaagtttttgataatggcagcatttacaacccggaagttttggatatcaccgaggaaacgttgcaca aacgttttctggaaggcgttcgtaacgtagccagcgtttgcctgcagatcggctatcctactgttgcttctataccccat tccatcatcaatgggtacaagcgagtcctggctgtggctgtggagaccaactactctttcccactagctgaaaaggtaaa ggccttcctggctgatccatcggcttttgccgcagctgccccagcagtgaccgaagcagctgttcctgcttcagcagctc cagtcaaagaggaagtcaaggaagaatcagaagagtctgatgaagacatgggctttggtctctttgactaaccacctgtc ctaggttgagtagagtggaattcaaaagaaataaataaaagtatacttattttacacatcc |
|
Protein
| Protein ID | habu1_s1966_g07220.t1 |
|---|---|
| Definition | - |
>habu1_s1966_g07220.t1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLP HIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVIVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQL IKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTVASIPHS IINGYKRVLAVAVETNYSFPLAEKVKAFLADPSAFAAAAPAVTEAAVPASAAPVKEEVKEESEESDEDMGFGLFD |
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