Gene
| Gene Model ID | habu1_s2064_g07506 |
|---|---|
| Locus | habu1_scaffold2064 : 1 ... 29475 : + |
| To GenomeBrowser | habu1_scaffold2064:1..29475 |
| Genes list of scaffold | habu1_scaffold2064 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cadherin- partial | GO:0005509 GO:0005916 GO:0005925 GO:0007156 GO:0007157 GO:0010001 GO:0016021 GO:0016324 GO:0016339 GO:0016342 GO:0016477 GO:0019903 GO:0030027 GO:0043410 GO:0044331 GO:0045202 GO:0045294 GO:0045295 GO:0048514 GO:0051146 GO:0070062 GO:0090090 GO:0097150 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2064_g07506.t2 | 5 | 1 | Cadherin | 4 | 75 | 0.0 | 278.4 | 3.3e-12 | 6.2e-09 | 35.9 |
| habu1_s2064_g07506.t2 | 5 | 2 | Cadherin | 92 | 191 | 0.0 | 278.4 | 1.7e-25 | 3.1e-22 | 78.6 |
| habu1_s2064_g07506.t2 | 5 | 3 | Cadherin | 207 | 306 | 0.0 | 278.4 | 5.7e-22 | 1.1e-18 | 67.3 |
| habu1_s2064_g07506.t2 | 5 | 4 | Cadherin | 322 | 414 | 0.0 | 278.4 | 6.1e-20 | 1.1e-16 | 60.8 |
| habu1_s2064_g07506.t2 | 5 | 5 | Cadherin | 429 | 520 | 0.0 | 278.4 | 2.6e-11 | 4.9e-08 | 33.1 |
| habu1_s2064_g07506.t2 | 1 | 1 | Cadherin_C | 567 | 738 | 0.0 | 163.4 | 0.0 | 0.0 | 158.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2064_g07506.t2 | gi|558180981|ref|XP_006127261.1| | PREDICTED: cadherin-2 isoform X3 [Pelodiscus sinensis] | 0.0 |
| habu1_s2064_g07506.t2 | gi|558180977|ref|XP_006127260.1| | PREDICTED: cadherin-2 isoform X2 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 14.1 |
| Venom grand-1 | 0.5 |
| Pit, infrared sensing | 3.5 |
| Nose | 5.2 |
| Brain-1 | 23.0 |
| Eye | 17.7 |
| fetal fibroblast | 50.9 |
| venom gland-2 | 0.3 |
| Brain-2 | 24.1 |
| Spleen | 1.8 |
| Lung | 3.5 |
| Liver | 2.3 |
| Kidney | 68.9 |
| Pancreas | 1.9 |
| Small intestine | 0.9 |
| Large intestine | 12.2 |
| Stomach | 25.3 |
| heart | 95.6 |
| ovary | 2.3 |
| cheek muscle | 1.5 |
Transcript
| Transcript ID | habu1_s2064_g07506.t1 |
|---|---|
| Definition | - |
>habu1_s2064_g07506.t1 atcagatctgatcgtgataaaagcctttccctgcgatatagcgttactggtccaggagctgatcagcctccaactggcat cttcatcatcaatcctatttcaggtcaactatcagtgacaaaaccattagatcgggagcaaattgcttcttttcatctaa gagcacacgctgtagatgtaaatgggaaccaggtggaaaatcccattgatattgttattaatgtcattgatatgaatgat aatagacctgaattcctacatcaggtttggaatgggacagtcccagaaggatcaaaaccaggcacctatgtgatgactgt cactgctattgatgctgatgatcccaacgttttgaatggaatgctgagatacagaatcttgtcacaagccccaagcaccc cttctccaaatatgtttacaatcaacaacgaaacaggtgacattatcacagttgcggctggacttgacagagagaaagta caacagtatacattaataattcaagctacagatatggaaggaaatccaacatacggtctttcaaacacggcaactgctgt catcacagtgacagatatcaatgacaatcccccagagttcactgccatgattttttatggtgaagttcctgaaaacagag tggatgttatagtagctaatttaactgtgacagataaagatcaaccacacacacctgcttggaatgcagtatacagaacg acaagtggtgatcccacaggccggtttactattcttaccgatccaaatagcaatgatgggttggtaactgttgtgaagcc tattgattttgagagcaataggaaatttgtattgaccgtagctgcagaaaaccaagtgcctttggcaaaaggaatacagc atcctcctcagtcaacagcaactgtatccattacagttattgatgtgaatgaaagcccaacttttgtcccagtcacaaag cttatacgtcaggaggaaggggttcttcctgggactgttttaacatcattcacagctcaggatccagatcgtttcatgca acagactactttaagatattcaaaactttcagatccagccaattggttaaagattgatccaattaatggtcaaataacaa caactagtgttctggacagagaatcaccacatgtgaaacataatatgtataatgctactttccttgccaccgacagtgga atcccactaatgagtgggactggtacccttcagatctatctgcttgacatcaatgataacgctccccgagtggatcctca agaagctacaacatgtgaaacactacagcccaacgcaacaaatatcacagcaatagatgatgatattgatccaaatgctg gaccatttgcatttgagttgccaaattctcctcccagtgttaagaaaaattggactattattcgcattagtggtgaccgt gcccaactggctttaaagatcaggttcttggaggctggaatatatgatgttccaataataataacagattctggaaatcc tcccaagtctagcacttctattctgaaagtgaaagtttgtcagtgtgatttaaatggagactgtacagatgctgacagga ttgttggtgcaggactaggcacgggtgctatcattgcaattcttctctgcatcatcatactacttgttctagttctaatg tttgtggtttggatgaaacgccgtgataaagaacgtcaggccaagcagttacttatagatccagaagatgatgtgagaga caatattctcaaatatgacgaagaaggtggtggagaagaagatcaggactatgatttaagtcagctccagcaacctgaca ctttagaaccagatgccatcaaacctgttggaataaggcggcttgatgaaagacctattcatgcagaacctcaatatcca gttaggtcagcagctccacatcctggggacattggagacttcattaatgagggactaaaagctgcagataacgaccctac agctcctccatatgactctcttctagtctttgactatgagggaagtggttccactgctggatctttgagctccctcaact cttcaagtagtggtggcgagcaagactatgattatctaaatgactggggtccacgtttcaagaaacttgctgatatgtac gggggaggtgatgactgaatgccttagtggccagcgttgcatttggacaagtacaaaccttttcactggtattcccaaca agcgtacagaagctaggctttaactttgtagtctactagcacaagtgcttgcagaaggctttggcataggctgcaaacat atttgggctcactgggaatatcagtcatccaatgctttttggaaaaaaaaaaggaaaacaaacaattgagctcagttaca cttgaattttacagtacagaagcactgggattttatgtgcctttttgtacctttttcagattggaattaattttatgttt aaggctttaaatggtactgatttatgaaaaatgaagaaaaatcacattggggatggggagaaagtgcagtcaccaatatg cttcaacatgcttttacattgcattgcttttattaaaataacaaaattgaaaaaacctc |
|
| Transcript ID | habu1_s2064_g07506.t2 |
| Definition | - |
>habu1_s2064_g07506.t2 atcagatctgatcgtgataaaagcctttccctgcgatatagcgttactggtccaggagctgatcagcctccaactggcat cttcatcatcaatcctatttcaggtcaactatcagtgacaaaaccattagatcgggagcaaattgcttcttttcatctaa gagcacacgctgtagatgtaaatgggaaccaggtggaaaatcccattgatattgttattaatgtcattgatatgaatgat aatagacctgaattcctacatcaggtttggaatgggacagtcccagaaggatcaaaaccaggcacctatgtgatgactgt cactgctattgatgctgatgatcccaacgttttgaatggaatgctgagatacagaatcttgtcacaagccccaagcaccc cttctccaaatatgtttacaatcaacaacgaaacaggtgacattatcacagttgcggctggacttgacagagagaaagta caacagtatacattaataattcaagctacagatatggaaggaaatccaacatacggtctttcaaacacggcaactgctgt catcacagtgacagatatcaatgacaatcccccagagttcactgccatgattttttatggtgaagttcctgaaaacagag tggatgttatagtagctaatttaactgtgacagataaagatcaaccacacacacctgcttggaatgcagtatacagaacg acaagtggtgatcccacaggccggtttactattcttaccgatccaaatagcaatgatgggttggtaactgttgtgaagcc tattgattttgagagcaataggaaatttgtattgaccgtagctgcagaaaaccaagtgcctttggcaaaaggaatacagc atcctcctcagtcaacagcaactgtatccattacagttattgatgtgaatgaaagcccaacttttgtcccagtcacaaag cttatacgtcaggaggaaggggttcttcctgggactgttttaacatcattcacagctcaggatccagatcgtttcatgca acagactactttaagatattcaaaactttcagatccagccaattggttaaagattgatccaattaatggtcaaataacaa caactagtgttctggacagagaatcaccacatgtgaaacataatatgtataatgctactttccttgccaccgacagtgga atcccactaatgagtgggactggtacccttcagatctatctgcttgacatcaatgataacgctccccgagtggatcctca agaagctacaacatgtgaaacactacagcccaacgcaacaaatatcacagcaatagatgatgatattgatccaaatgctg gaccatttgcatttgagttgccaaattctcctcccagtgttaagaaaaattggactattattcgcattagtggtgaccgt gcccaactggctttaaagatcaggttcttggaggctggaatatatgatgttccaataataataacagattctggaaatcc tcccaagtctagcacttctattctgaaagtgaaagtttgtcagtgtgatttaaatggagactgtacagatgctgacagga ttgttggtgcaggactaggcacgggtgctatcattgcaattcttctctgcatcatcatactacttgttctagttctaatg tttgtggtttggatgaaacgccgtgataaagaacgtcaggccaagcagttacttatagatccagaagatgatgtgagaga caatattctcaaatatgacgaagaaggtggtggagaagaagatcaggactatgatttaagtcagctccagcaacctgaca ctttagaaccagatgccatcaaacctgttggaataaggcggcttgatgaaagacctattcatgcagaacctcaatatcca gttaggtcagcagctccacatcctggggacattggagacttcattaatgagctggagagtgctgcttttgcagcaatagc tattggcaggccaaatcagggactaaaagctgcagataacgaccctacagctcctccatatgactctcttctagtctttg actatgagggaagtggttccactgctggatctttgagctccctcaactcttcaagtagtggtggcgagcaagactatgat tatctaaatgactggggtccacgtttcaagaaacttgctgatatgtacgggggaggtgatgactgaatgccttagtggcc agcgttgcatttggacaagtacaaaccttttcactggtattcccaacaagcgtacagaagctaggctttaactttgtagt ctactagcacaagtgcttgcagaaggctttggcataggctgcaaacatatttgggctcactgggaatatcagtcatccaa tgctttttggaaaaaaaaaaggaaaacaaacaattgagctcagttacacttgaattttacagtacagaagcactgggatt ttatgtgcctttttgtacctttttcagattggaattaattttatgtttaaggctttaaatggtactgatttatgaaaaat gaagaaaaatcacattggggatggggagaaagtgcagtcaccaatatgcttcaacatgcttttacattgcattgctttta ttaaaataacaaaattgaaaaaacctc |
|
Protein
| Protein ID | habu1_s2064_g07506.t1 |
|---|---|
| Definition | - |
>habu1_s2064_g07506.t1 IRSDRDKSLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREQIASFHLRAHAVDVNGNQVENPIDIVINVIDMND NRPEFLHQVWNGTVPEGSKPGTYVMTVTAIDADDPNVLNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKV QQYTLIIQATDMEGNPTYGLSNTATAVITVTDINDNPPEFTAMIFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAVYRT TSGDPTGRFTILTDPNSNDGLVTVVKPIDFESNRKFVLTVAAENQVPLAKGIQHPPQSTATVSITVIDVNESPTFVPVTK LIRQEEGVLPGTVLTSFTAQDPDRFMQQTTLRYSKLSDPANWLKIDPINGQITTTSVLDRESPHVKHNMYNATFLATDSG IPLMSGTGTLQIYLLDINDNAPRVDPQEATTCETLQPNATNITAIDDDIDPNAGPFAFELPNSPPSVKKNWTIIRISGDR AQLALKIRFLEAGIYDVPIIITDSGNPPKSSTSILKVKVCQCDLNGDCTDADRIVGAGLGTGAIIAILLCIIILLVLVLM FVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDTLEPDAIKPVGIRRLDERPIHAEPQYP VRSAAPHPGDIGDFINEGLKAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSSGGEQDYDYLNDWGPRFKKLADMY GGGDD |
|
| Protein ID | habu1_s2064_g07506.t2 |
| Definition | - |
>habu1_s2064_g07506.t2 IRSDRDKSLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDREQIASFHLRAHAVDVNGNQVENPIDIVINVIDMND NRPEFLHQVWNGTVPEGSKPGTYVMTVTAIDADDPNVLNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKV QQYTLIIQATDMEGNPTYGLSNTATAVITVTDINDNPPEFTAMIFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAVYRT TSGDPTGRFTILTDPNSNDGLVTVVKPIDFESNRKFVLTVAAENQVPLAKGIQHPPQSTATVSITVIDVNESPTFVPVTK LIRQEEGVLPGTVLTSFTAQDPDRFMQQTTLRYSKLSDPANWLKIDPINGQITTTSVLDRESPHVKHNMYNATFLATDSG IPLMSGTGTLQIYLLDINDNAPRVDPQEATTCETLQPNATNITAIDDDIDPNAGPFAFELPNSPPSVKKNWTIIRISGDR AQLALKIRFLEAGIYDVPIIITDSGNPPKSSTSILKVKVCQCDLNGDCTDADRIVGAGLGTGAIIAILLCIIILLVLVLM FVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDTLEPDAIKPVGIRRLDERPIHAEPQYP VRSAAPHPGDIGDFINELESAAFAAIAIGRPNQGLKAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSSGGEQDYD YLNDWGPRFKKLADMYGGGDD |
|