Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s2069_g07560
Locus habu1_scaffold2069 : 130942 ... 174535 : -
To GenomeBrowser habu1_scaffold2069:130942..174535
Genes list of scaffold habu1_scaffold2069

Annotation by Blast2GO
Annotation GO
zinc finger and btb domain-containing protein 14 GO:0003700 GO:0005634 GO:0005667 GO:0043565 GO:0044212 GO:0045449 GO:0045892 GO:0046872

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s2069_g07560.t2 1 1 BTB 20 122 3.3e-28 97.8 8.6e-31 6.1e-28 97.0
habu1_s2069_g07560.t2 3 1 zf-C2H2_4 270 291 4.2e-20 70.5 2.6e-06 0.0018 18.4
habu1_s2069_g07560.t2 1 1 zf-C2H2_jaz 270 289 1.5e-15 56.8 3.5e-06 0.0025 17.9
habu1_s2069_g07560.t2 5 1 zf-C2H2 271 291 4.3e-25 86.4 5.6e-06 0.004 17.4
habu1_s2069_g07560.t2 4 1 zf-H2C2_2 284 308 3.4e-24 83.8 8.3e-08 5.8e-05 23.1
habu1_s2069_g07560.t2 5 2 zf-C2H2 297 319 4.3e-25 86.4 9.5e-08 6.7e-05 22.9
habu1_s2069_g07560.t2 3 2 zf-C2H2_4 297 319 4.2e-20 70.5 7.2e-06 0.005 17.0
habu1_s2069_g07560.t2 1 1 zf-met 297 317 6.7e-14 51.5 3.2e-06 0.0023 18.1
habu1_s2069_g07560.t2 4 2 zf-H2C2_2 311 334 3.4e-24 83.8 3.2e-09 2.3e-06 27.6
habu1_s2069_g07560.t2 5 3 zf-C2H2 325 347 4.3e-25 86.4 2.7e-08 1.9e-05 24.7
habu1_s2069_g07560.t2 3 3 zf-C2H2_4 325 347 4.2e-20 70.5 1.9e-06 0.0014 18.8
habu1_s2069_g07560.t2 4 3 zf-H2C2_2 339 364 3.4e-24 83.8 3.2e-09 2.2e-06 27.6
habu1_s2069_g07560.t2 5 4 zf-C2H2 353 375 4.3e-25 86.4 3.2e-07 0.00022 21.3
habu1_s2069_g07560.t2 4 4 zf-H2C2_2 367 391 3.4e-24 83.8 2.1e-08 1.5e-05 25.0
habu1_s2069_g07560.t2 5 5 zf-C2H2 381 404 4.3e-25 86.4 7.2e-07 0.00051 20.2

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 2.1
Venom grand-1 1.2
Pit, infrared sensing 2.4
Nose 2.0
Brain-1 2.9
Eye 1.8
fetal fibroblast 4.0
venom gland-2 3.0
Brain-2 2.6
Spleen 2.5
Lung 1.5
Liver 0.4
Kidney 1.7
Pancreas 0.7
Small intestine 1.3
Large intestine 1.4
Stomach 1.3
heart 1.7
ovary 3.3
cheek muscle 2.3

Transcript
Transcript IDhabu1_s2069_g07560.t1
Definition-
>habu1_s2069_g07560.t1
gcgcgcactcgaggctcgactgctgcagcagaaccggagggaggcggggaggtgcactggagaggttccgtcgcgcgccg
ccccttgctgctcttcctgcgcgcgccgttgggtctcgggcctggaaggctgccttggcactactggaaccgccgccgtc
tcctttaccccggagcaggaggatgccggagatggcgcagtcccgtgcagcgcggcggcaggcaaaggctcgctccgtgt
ttgccacatccattaaatgaatcactacagaatcactaaaagatggtgttaaatttagagaagccacaagaaatctggag
aggaggttccattcagaaaacaatcatgtggaccataaccagcaacaaaagttgcgagtctttcaagtttcctttcttgc
tacacctttgtccttttcctgggtgcagggagcccaggataagaatctgctttcaaaacattgctcagatactaaggaaa
gatttttccttgttcatggagtttttcatcagtatgtctgaaaccattaaatataatgacgacgatcacaaaactgtgtt
tctgaaaacattaaatgagcaacgattggaaggagaattttgtgacatagctattgttgtagaagatgtaaaattcaggg
cacacaggtgtgttctagctgcttgtagtacctattttaaaaaacttttcaaaaaactggaagttgacagctcatctgta
attgaaatagatttccttcgatctgatatatttgaggaagtgctcaattatatgtacacagccaagatttcggttaagaa
agaagacgtcaatttaatgatgtcatctggtcagattcttggtattagatttttggataaactttgttctcaaaaacggg
acgtatcaagcccagaagacaattcacaatcaaagaataagtattgtcttaaaataaatagaccaattggggagtctaat
gataaccaagacgatgaggttgaagaaattggtgatcatgatgatagtccatcagatatgacaatggaaggaactcctcc
tagtcaagaggatggtaaatcgccaactgctaccttaagagttcaggaagcaattctgaaggagctagggagtgaagagg
ttcgaaaagtgaactgctatggtcaagaagtagagtctatagagtctgctgaaactaaagaattaggatcacagactcct
caggctctagcatttaatgatggcataagtgaagtaaaggatgaacagacaccagcatggacaacagcagctggagacat
gaaatttgagtatttgctttatggtcacagggaacaaattgcatgtccagcatgtggcaaaacattttctgatgaagcac
gattgagaaaacatgaaaagctccatacagcggataggccctttgtttgcgaaatgtgcactaaaggcttcacaactcaa
gcccacttgaaagagcatctaaagatccacacaggctacaagccctatagctgtgaagtatgtggaaagtcttttattcg
tgcaccagacctaaaaaagcacgagagggttcacagtaatgaaagaccatttgcgtgtcacatgtgtgacaaagctttta
agcataagtcccacctgaaagatcatgaaagaagacatagaggggagaaaccttttgtctgcagctcttgtactaaagca
tttgccaaagcatctgatttaaagagacatgagaacaatatgcacagtgaaaggaagcaagaaggaaccatggtgtttgc
tccaggggataaatctggaaccagacaggaagaaacaaaactgcagaatgccagcaaattgattgtgcgtatagccattc
agcaggcaatccagcaattttcccaggagatccacccaaaggaaaaaggcacagacaacaatatgctgaaattttaagct
caaaaaaagaaaaaagaaaaaaaaactcttgaggcaagtcaaatagttttcctgtcttatcagctaaatccaggaagaag
gggaaaaaaatcagcaaccagagtatgctctgcaattagctatgcttgaggctgagaaaataaagtgttttgctgttcct
ttgatt
Transcript IDhabu1_s2069_g07560.t2
Definition-
>habu1_s2069_g07560.t2
gcgcgcactcgaggctcgactgctgcagcagaaccggagggaggcggggaggtgcactggagaggttccgtcgcgcgccg
ccccttgctgctcttcctgcgcgcgccgttgggtctcgggcctggaaggctgccttggcactactggaaccgccgccgtc
tcctttaccccggagcaggaggatgccggagatggcgcagtcccgtgcagcgcggcggcaggcaaaggctcgctccgtgg
tgcagggagcccaggataagaatctgctttcaaaacattgctcagatactaaggaaagatttttccttgttcatggagtt
tttcatcagtatgtctgaaaccattaaatataatgacgacgatcacaaaactgtgtttctgaaaacattaaatgagcaac
gattggaaggagaattttgtgacatagctattgttgtagaagatgtaaaattcagggcacacaggtgtgttctagctgct
tgtagtacctattttaaaaaacttttcaaaaaactggaagttgacagctcatctgtaattgaaatagatttccttcgatc
tgatatatttgaggaagtgctcaattatatgtacacagccaagatttcggttaagaaagaagacgtcaatttaatgatgt
catctggtcagattcttggtattagatttttggataaactttgttctcaaaaacgggacgtatcaagcccagaagacaat
tcacaatcaaagaataagtattgtcttaaaataaatagaccaattggggagtctaatgataaccaagacgatgaggttga
agaaattggtgatcatgatgatagtccatcagatatgacaatggaaggaactcctcctagtcaagaggatggtaaatcgc
caactgctaccttaagagttcaggaagcaattctgaaggagctagggagtgaagaggttcgaaaagtgaactgctatggt
caagaagtagagtctatagagtctgctgaaactaaagaattaggatcacagactcctcaggctctagcatttaatgatgg
cataagtgaagtaaaggatgaacagacaccagcatggacaacagcagctggagacatgaaatttgagtatttgctttatg
gtcacagggaacaaattgcatgtccagcatgtggcaaaacattttctgatgaagcacgattgagaaaacatgaaaagctc
catacagcggataggccctttgtttgcgaaatgtgcactaaaggcttcacaactcaagcccacttgaaagagcatctaaa
gatccacacaggctacaagccctatagctgtgaagtatgtggaaagtcttttattcgtgcaccagacctaaaaaagcacg
agagggttcacagtaatgaaagaccatttgcgtgtcacatgtgtgacaaagcttttaagcataagtcccacctgaaagat
catgaaagaagacatagaggggagaaaccttttgtctgcagctcttgtactaaagcatttgccaaagcatctgatttaaa
gagacatgagaacaatatgcacagtgaaaggaagcaagaaggaaccatggtgtttgctccaggggataaatctggaacca
gacaggaagaaacaaaactgcagaatgccagcaaattgattgtgcgtatagccattcagcaggcaatccagcaattttcc
caggagatccacccaaaggaaaaaggcacagacaacaatatgctgaaattttaagctcaaaaaaagaaaaaagaaaaaaa
aactcttgaggcaagtcaaatagttttcctgtcttatcagctaaatccaggaagaaggggaaaaaaatcagcaaccagag
tatgctctgcaattagctatgcttgaggctgagaaaataaagtgttttgctgttcctttgatt

Protein
Protein IDhabu1_s2069_g07560.t1
Definition-
>habu1_s2069_g07560.t1
MVLNLEKPQEIWRGGSIQKTIMWTITSNKSCESFKFPFLLHLCPFPGCREPRIRICFQNIAQILRKDFSLFMEFFISMSE
TIKYNDDDHKTVFLKTLNEQRLEGEFCDIAIVVEDVKFRAHRCVLAACSTYFKKLFKKLEVDSSSVIEIDFLRSDIFEEV
LNYMYTAKISVKKEDVNLMMSSGQILGIRFLDKLCSQKRDVSSPEDNSQSKNKYCLKINRPIGESNDNQDDEVEEIGDHD
DSPSDMTMEGTPPSQEDGKSPTATLRVQEAILKELGSEEVRKVNCYGQEVESIESAETKELGSQTPQALAFNDGISEVKD
EQTPAWTTAAGDMKFEYLLYGHREQIACPACGKTFSDEARLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYK
PYSCEVCGKSFIRAPDLKKHERVHSNERPFACHMCDKAFKHKSHLKDHERRHRGEKPFVCSSCTKAFAKASDLKRHENNM
HSERKQEGTMVFAPGDKSGTRQEETKLQNASKLIVRIAIQQAIQQFSQEIHPKEKGTDNNMLKF
Protein IDhabu1_s2069_g07560.t2
Definition-
>habu1_s2069_g07560.t2
MSETIKYNDDDHKTVFLKTLNEQRLEGEFCDIAIVVEDVKFRAHRCVLAACSTYFKKLFKKLEVDSSSVIEIDFLRSDIF
EEVLNYMYTAKISVKKEDVNLMMSSGQILGIRFLDKLCSQKRDVSSPEDNSQSKNKYCLKINRPIGESNDNQDDEVEEIG
DHDDSPSDMTMEGTPPSQEDGKSPTATLRVQEAILKELGSEEVRKVNCYGQEVESIESAETKELGSQTPQALAFNDGISE
VKDEQTPAWTTAAGDMKFEYLLYGHREQIACPACGKTFSDEARLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHT
GYKPYSCEVCGKSFIRAPDLKKHERVHSNERPFACHMCDKAFKHKSHLKDHERRHRGEKPFVCSSCTKAFAKASDLKRHE
NNMHSERKQEGTMVFAPGDKSGTRQEETKLQNASKLIVRIAIQQAIQQFSQEIHPKEKGTDNNMLKF

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