Gene
| Gene Model ID | habu1_s213_g01181 |
|---|---|
| Locus | habu1_scaffold213 : 18516 ... 40198 : + |
| To GenomeBrowser | habu1_scaffold213:18516..40198 |
| Genes list of scaffold | habu1_scaffold213 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna polymerase subunit gamma-1 isoform x1 | EC:2.7.7.7 GO:0000785 GO:0002020 GO:0003677 GO:0003682 GO:0003887 GO:0004527 GO:0005743 GO:0005760 GO:0006264 GO:0006287 GO:0007568 GO:0042645 GO:0070062 GO:0071897 GO:0090305 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s213_g01181.t1 | 1 | 1 | DNA_pol_A | 693 | 1144 | 0.0 | 429.2 | 0.0 | 0.0 | 428.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s213_g01181.t1 | gi|602654941|ref|XP_007433253.1| | PREDICTED: DNA polymerase subunit gamma-1 [Python bivittatus] | 0.0 |
| habu1_s213_g01181.t1 | gi|637351185|ref|XP_008118379.1| | PREDICTED: DNA polymerase subunit gamma-1 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s213_g01181.t1 | gi|530606508|ref|XP_005294954.1| | PREDICTED: DNA polymerase subunit gamma-1 [Chrysemys picta bellii] | 0.0 |
| habu1_s213_g01181.t1 | gi|558231433|ref|XP_006139352.1| | PREDICTED: DNA polymerase subunit gamma-1 isoform X2 [Pelodiscus sinensis] | 0.0 |
| habu1_s213_g01181.t1 | gi|558231431|ref|XP_006139351.1| | PREDICTED: DNA polymerase subunit gamma-1 isoform X1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.3 |
| Venom grand-1 | 2.0 |
| Pit, infrared sensing | 1.8 |
| Nose | 1.9 |
| Brain-1 | 2.4 |
| Eye | 1.5 |
| fetal fibroblast | 3.2 |
| venom gland-2 | 1.8 |
| Brain-2 | 2.2 |
| Spleen | 3.9 |
| Lung | 2.1 |
| Liver | 2.0 |
| Kidney | 2.0 |
| Pancreas | 2.1 |
| Small intestine | 2.4 |
| Large intestine | 3.0 |
| Stomach | 2.6 |
| heart | 1.3 |
| ovary | 17.6 |
| cheek muscle | 1.8 |
Transcript
| Transcript ID | habu1_s213_g01181.t1 |
|---|---|
| Definition | - |
>habu1_s213_g01181.t1 ggggcatcttcttctcttcctgcatctacttttcttgggaaaaggaggaaggcagatttccttcggattaggtgatctga gctggccaggaaatcgggcttgttttcccaaccgctcgcccgtaggtgaagatgaagcgcctgccgtggaggacgtcgct ggcaggtccatccttcttgtgcagaacccgggcgtgcgcctcccgttcctctgcggggctcctgcttcaggagaagatgg cgccagatacgggtgctcctcccaaagaggaccaacgcatgaatcctcttggcatccagatgctctccaagggccttcat gaacagatcttccggggggctcaagttcattattcagaggaagacatccagaagagcgtagaacacttggagaggcatga cttgtggggcaaagagacagccaccattcctgatgtggcattgcagcttccccggatgtatggagcgaacatcgatgaac atttccgcctcttggctcagaagcaaagcctcccatatctggaggctgcgaaggagctttttgagcacgagagcccacca aggcccacggagtgggcttgggaagtagggtggactcggtacggtcccgagggggagagggaaaaggtggatttccccga tgaacgagctttggtctttgatgtggaggtgtgcatggaagaaggacattgtcccaccctcgcagtggctttgtcatcca atgcttggtattcttggtgcagcaagcgtctgctggaacgacgctatagctggtctaaccaactggggctgtccgatctc atccctctggaaaccagcagcagcctcaaaaagcagactgggcaggagaggctggtgattggccacaacgtctccttcga ccgggctcacgttaaggagcaatacctgatccagggatcccaaatgcggttcctggacacgatgagcatgcacatggcta tctccggactgactggtttccagcgcagcctttggaaggccgccaagcagggcaaggggagaggactgcaacaggtccag caacacatcaagaaaacacgaagaaaaggcagtggacccgtggttggctcctggaactgggtgaacatcagcagtatcaa caacctggccgatgtgcattccctctatgttggagggcagccgttacagaaagaagcccgtgaactcttcgtcaagggca gcatgaatgatatcaggaataacttccaggagctgatgaattactgcgcccttgatgttcaggctacttatgaaatattc cacgagcagcttcctcttttcttgcaaaggtgtccacatcctgtgacttttgcaggtatgctagaaatgggggtttctta cttacctgtcaatcagaactgggtgaagtacctggatgaagctcaggtcacttacgaggagctgcaaaaagagatgaaga agtctctgatgaacttggccgacaatgcttgtcagctgcttcacgaggagaggtacaaagatgacccctggttgtgggat ctgaaatgggacctccaaacttttaagcaaaagaaaacgaaaccaactaggaagaaaaaggaagacgtgaatgaagagcc agctaaagtagtggaaagagcatctccgctggagtggcaggaagatcctggtcctctgacagaagaaggagaacaaagcc aaaatgccagccaacaggttcttcagagtctaaaggagacagtggttttgcagccaaagagaattcagcatctccctggc catccagagtggtaccgcaacctgtgtccacggctcaatgatcctagttgggcccctgggcccagccttatcagccttca aatgagagtgactccaaagctcatgaggctcaactgggatggctttccattgcactactctgagaaacatggctggggct acctggtgccaggaaggaaggacaacctgttagaggatgatccagacgctgcatcggccacctgccctttcaaggtaata gaacatctgtatcgggaatattgcaaggagaaaggcaaggagcaaccggtttcactcggcagctacctggaagaagagtt cttaatggagaacggtgatttttgggaaaagtttgagttgcttggccatgtggaagtggatatggatgtggatcctatca ccagagaactgaggcaggaggagatggagttggtgaagagttcacctgaatatcaccatggcaacggaccttacaatgat gtcaatattccaggatgctggttttttaagctgcctcacaaagatggcaatgccagcaatgttgggagcccatttgccaa ggatttcttacccaagatggaagatggcactcttaaagctggaataggagcagcagatgggacccacgctttggaaatca acaagaaaatctccttctggagaaacgctcataaacgcatcagttcacagatagtggtttggttgaagaaaggggagctg ccaagatccgtgactaggcacccagactacgatgacgagaatgcttatggagccatcctgccacaagtagtgactgctgg aacggtcactcggcgagctgtggagcccacatggctgaccgccagcaatgccaggaccgaccgggtgggcagcgagctca aagcgatcgtccagactcctcctggttaccatctggttggagccgatgttgattctcaagagctttggatagcagctgtc ttgggagaagcccattttgctggcatgcatggctgcaccgcttttggctggatgacgcttcaggggaagaaaagcaatgg cacggatctgcacagcaagacggcctccaccgtggggatcagccgagagcacgccaaggtgttcaactacggacgtatct atggggcaggacaggcgtttgctgagcgcctcctcatgcagttcaaccaccgcctgacagaacaggaagccagtgagaag gcccggcaaatgtacgccgtcacgaagggaatccgacgctgccacctgtctgaggaaggggaatggctagtgaatcaatt gggcctcacagtagacagagcagaagatggttccatacccttgcaagacgtgtggcggttacaaagagaagcaaagaaac gatctcgtaggaagaagtgggacatggtgtgccagcgagtgtgggccagtggcacagaatctgaaatgttcaacaaactg gaaagcatcgccatgtcggaagcacccagcaccccagtgctgggctgtcgaatttctagagcattggagccagcagctgt tgaaggcgagtttgtgaccagcagaataaattgggtggttcagagttcagcagtggattatctgcatctgatgctcgtat ctatgaaatggctctttgagctatttgacattgatggacgtttttgcatcagcatccatgacgaagtgcgctacttggtc aagagcgaggaccgctatcgggcagcgcttgccctgcagatcaccaacctcctcacacggtgtatgtttgcctataaact cggtcttcaggatctgcctcagtcggtggcctttttcagcgcggtagatattgatcattgtttaaggaaagaggcgacaa tggattgtgtcaccccgtccaacccaggaggactggagcaaaggtacaacatcccacaaggagaagctctggatatatac aaacttattaaaataacaaaaggttccttggaaaaaggaaaatgaagtttgagtttagaagttaaccggacccgct |
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Protein
| Protein ID | habu1_s213_g01181.t1 |
|---|---|
| Definition | - |
>habu1_s213_g01181.t1 MKRLPWRTSLAGPSFLCRTRACASRSSAGLLLQEKMAPDTGAPPKEDQRMNPLGIQMLSKGLHEQIFRGAQVHYSEEDIQ KSVEHLERHDLWGKETATIPDVALQLPRMYGANIDEHFRLLAQKQSLPYLEAAKELFEHESPPRPTEWAWEVGWTRYGPE GEREKVDFPDERALVFDVEVCMEEGHCPTLAVALSSNAWYSWCSKRLLERRYSWSNQLGLSDLIPLETSSSLKKQTGQER LVIGHNVSFDRAHVKEQYLIQGSQMRFLDTMSMHMAISGLTGFQRSLWKAAKQGKGRGLQQVQQHIKKTRRKGSGPVVGS WNWVNISSINNLADVHSLYVGGQPLQKEARELFVKGSMNDIRNNFQELMNYCALDVQATYEIFHEQLPLFLQRCPHPVTF AGMLEMGVSYLPVNQNWVKYLDEAQVTYEELQKEMKKSLMNLADNACQLLHEERYKDDPWLWDLKWDLQTFKQKKTKPTR KKKEDVNEEPAKVVERASPLEWQEDPGPLTEEGEQSQNASQQVLQSLKETVVLQPKRIQHLPGHPEWYRNLCPRLNDPSW APGPSLISLQMRVTPKLMRLNWDGFPLHYSEKHGWGYLVPGRKDNLLEDDPDAASATCPFKVIEHLYREYCKEKGKEQPV SLGSYLEEEFLMENGDFWEKFELLGHVEVDMDVDPITRELRQEEMELVKSSPEYHHGNGPYNDVNIPGCWFFKLPHKDGN ASNVGSPFAKDFLPKMEDGTLKAGIGAADGTHALEINKKISFWRNAHKRISSQIVVWLKKGELPRSVTRHPDYDDENAYG AILPQVVTAGTVTRRAVEPTWLTASNARTDRVGSELKAIVQTPPGYHLVGADVDSQELWIAAVLGEAHFAGMHGCTAFGW MTLQGKKSNGTDLHSKTASTVGISREHAKVFNYGRIYGAGQAFAERLLMQFNHRLTEQEASEKARQMYAVTKGIRRCHLS EEGEWLVNQLGLTVDRAEDGSIPLQDVWRLQREAKKRSRRKKWDMVCQRVWASGTESEMFNKLESIAMSEAPSTPVLGCR ISRALEPAAVEGEFVTSRINWVVQSSAVDYLHLMLVSMKWLFELFDIDGRFCISIHDEVRYLVKSEDRYRAALALQITNL LTRCMFAYKLGLQDLPQSVAFFSAVDIDHCLRKEATMDCVTPSNPGGLEQRYNIPQGEALDIYKLIKITKGSLEKGK |
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