Gene
| Gene Model ID | habu1_s21746_g22438 |
|---|---|
| Locus | habu1_scaffold21746 : 37606 ... 64893 : + |
| To GenomeBrowser | habu1_scaffold21746:37606..64893 |
| Genes list of scaffold | habu1_scaffold21746 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transformer-2 protein homolog alpha isoform x4 | GO:0000166 GO:0000398 GO:0005730 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s21746_g22438.t2 | 1 | 1 | RRM_1 | 121 | 189 | 3.9e-20 | 71.2 | 1.5e-23 | 5.6e-20 | 70.7 |
| habu1_s21746_g22438.t2 | 1 | 1 | RRM_6 | 124 | 189 | 1.0e-15 | 57.4 | 4.1e-19 | 1.5e-15 | 56.8 |
| habu1_s21746_g22438.t2 | 1 | 1 | RRM_5 | 133 | 193 | 1.6e-09 | 37.4 | 6.1e-13 | 2.3e-09 | 36.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s21746_g22438.t2 | gi|602637868|ref|XP_007425772.1| | PREDICTED: transformer-2 protein homolog alpha isoform X2 [Python bivittatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 29.6 |
| Venom grand-1 | 35.7 |
| Pit, infrared sensing | 28.5 |
| Nose | 20.6 |
| Brain-1 | 10.8 |
| Eye | 33.9 |
| fetal fibroblast | 23.0 |
| venom gland-2 | 24.4 |
| Brain-2 | 12.0 |
| Spleen | 35.9 |
| Lung | 34.8 |
| Liver | 27.4 |
| Kidney | 18.5 |
| Pancreas | 38.6 |
| Small intestine | 32.3 |
| Large intestine | 30.1 |
| Stomach | 31.3 |
| heart | 30.2 |
| ovary | 13.2 |
| cheek muscle | 30.5 |
Transcript
| Transcript ID | habu1_s21746_g22438.t1 |
|---|---|
| Definition | - |
>habu1_s21746_g22438.t1 gccacagcataggagttagataattggaggcagtggcaggagaaagtcggggctcggcgctcctccctcggatttccact tgtttggccacctgccgccttagacacgcgccagcatgagcgacgtggaggagaataacttcgaggggagggaatcacgc tcccagtcaaaatctccagctgggagtcctgctcgtgcaaaatctgagagcaggtcacgatctcgtagcccatcaaaagc ttctaaacattctgaatcacactctcgatcaagatcaaaatccagatctagatccagaagacattctcacaggcgatata ctcgctctagatcccattctcacaagcggcgatcacgaagtagatcttataccccagaatatcggcgtcgaaggagccga agccattctcctatgtctaaccgaagaaggcatactggcagcagagtatgtagtgctaatccggatcctaatttatgtct tggagtgtttggcctcagcttatatactactgagagagatcttcgagaagtcttttcccgttacggaccattgagtggag tcaatgtggtgtatgatcaacggactgggcgatcaagaggatttgctttcgtttactttgaaagaatagacgattctaaa gaggctatggaacatgcaaatggaatggagctggatggtagaagaatccgagtagattactctatcacaaagagagcaca tacacccacccctggtatctatatgggcagaccaactcagaggcgatcaccttcaccatattatagtcgttacagatcaa gatcaagatctcgttcctacagtccaaggcgttattaagaagagaagtcagttacagagcaaataccatttttcaacagc atgttctgaacctagcttttcctgggtctcctaccattatcctgtatccaattaaaatgtccctggttcattaagatg |
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| Transcript ID | habu1_s21746_g22438.t2 |
| Definition | - |
>habu1_s21746_g22438.t2 gccacagcataggagttagataattggaggcagtggcaggagaaagtcggggctcggcgctcctccctcggatttccact tgtttggccacctgccgccttagacacgcgccagcatgagcgacgtggaggagaataacttcgaggggagggaatcacgc tcccagtcaaaatctccagctgggagtcctgctcgtgcaaaatctgagagcaggtcacgatctcgtagcccatcaaaagc ttctaaacattctgaatcacactctcgatcaagatcaaaatccagatctagatccagaagacattctcacaggcgatata ctcgctctagatcccattctcacaagcggcgatcacgaagtagatcttataccccagaatatcggcgtcgaaggagccga agccattctcctatgtctaaccgaagaaggcatactggcagcagagctaatccggatcctaatttatgtcttggagtgtt tggcctcagcttatatactactgagagagatcttcgagaagtcttttcccgttacggaccattgagtggagtcaatgtgg tgtatgatcaacggactgggcgatcaagaggatttgctttcgtttactttgaaagaatagacgattctaaagaggctatg gaacatgcaaatggaatggagctggatggtagaagaatccgagtagattactctatcacaaagagagcacatacacccac ccctggtatctatatgggcagaccaactcagaggcgatcaccttcaccatattatagtcgttacagatcaagatcaagat ctcgttcctacagtccaaggcgttattaagaagagaagtcagttacagagcaaataccatttttcaacagcatgttctga acctagcttttcctgggtctcctaccattatcctgtatccaattaaaatgtccctggttcattaagatg |
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Protein
| Protein ID | habu1_s21746_g22438.t1 |
|---|---|
| Definition | - |
>habu1_s21746_g22438.t1 MSDVEENNFEGRESRSQSKSPAGSPARAKSESRSRSRSPSKASKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHKRRS RSRSYTPEYRRRRSRSHSPMSNRRRHTGSRVCSANPDPNLCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRS RGFAFVYFERIDDSKEAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTQRRSPSPYYSRYRSRSRSRSYSPRRY |
|
| Protein ID | habu1_s21746_g22438.t2 |
| Definition | - |
>habu1_s21746_g22438.t2 MSDVEENNFEGRESRSQSKSPAGSPARAKSESRSRSRSPSKASKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHKRRS RSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNLCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGF AFVYFERIDDSKEAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTQRRSPSPYYSRYRSRSRSRSYSPRRY |
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