Gene
| Gene Model ID | habu1_s2206_g07881 |
|---|---|
| Locus | habu1_scaffold2206 : 70172 ... 123505 : - |
| To GenomeBrowser | habu1_scaffold2206:70172..123505 |
| Genes list of scaffold | habu1_scaffold2206 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| exosome complex component rrp43 | GO:0000178 GO:0005634 GO:0005737 GO:0017091 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2206_g07881.t1 | 1 | 1 | RNase_PH | 35 | 170 | 2.7e-26 | 92.4 | 1.1e-29 | 8.3e-26 | 90.8 |
| habu1_s2206_g07881.t1 | 1 | 1 | RNase_PH_C | 197 | 260 | 2.4e-12 | 46.6 | 6.5e-16 | 4.8e-12 | 45.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2206_g07881.t1 | gi|602655055|ref|XP_007433299.1| | PREDICTED: exosome complex component RRP43 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s2206_g07881.t1 | gi|602655063|ref|XP_007433303.1| | PREDICTED: exosome complex component RRP43 isoform X5 [Python bivittatus] | 0.0 |
| habu1_s2206_g07881.t1 | gi|602655067|ref|XP_007433305.1| | PREDICTED: exosome complex component RRP43 isoform X7 [Python bivittatus] | 0.0 |
| habu1_s2206_g07881.t1 | gi|327264085|ref|XP_003216847.1| | PREDICTED: exosome complex component RRP43 [Anolis carolinensis] | 0.0 |
| habu1_s2206_g07881.t1 | gi|564257082|ref|XP_006267502.1| | PREDICTED: exosome complex component RRP43 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.9 |
| Venom grand-1 | 10.8 |
| Pit, infrared sensing | 7.2 |
| Nose | 8.6 |
| Brain-1 | 4.2 |
| Eye | 7.9 |
| fetal fibroblast | 12.1 |
| venom gland-2 | 9.1 |
| Brain-2 | 4.3 |
| Spleen | 7.2 |
| Lung | 6.7 |
| Liver | 7.1 |
| Kidney | 5.5 |
| Pancreas | 10.9 |
| Small intestine | 7.8 |
| Large intestine | 8.7 |
| Stomach | 7.2 |
| heart | 8.2 |
| ovary | 14.9 |
| cheek muscle | 10.1 |
Transcript
| Transcript ID | habu1_s2206_g07881.t1 |
|---|---|
| Definition | - |
>habu1_s2206_g07881.t1 ccgtaaactggaggcttttaagaagacattggacagccacttgtctgaaatggtatagggtctcctgctttagcaggggg ttggactagaagacctccagggtcccttccaactctgttattctatgttctatgcattgaagttagtctgagtgggtact tatacggcaatgaaaatctttggcagcaatctttgaacagttttatattggagaagctgttttgtatacacttttgtatt ctgaagctcatcgtcggttcgttttctaaggagactgcgagaccgctctctttggtttttgccgaaactgccgacaacgt gccaatctcaccttttcctagttttagttacatcgcagactcgatttagtagcgccatccgcaactggattgttttcagt ctctctcagttgctaaacgaagaaaccagtgaagtgacgatgacggcgaccataacggccgcgttcagaactgtagaacc tttggaatattacagaagattcttaaaagaaaattgtcggcctgacggaagggaccttggcgaatttaggaccacaacta tcaacataggttcaattacaactgcagatggctctgcacttgtgaagttagggaatactacagtgatatgcggcataaaa gcagaatttgcaacacccaccgttgattccagtaacaaaggatatatcattcccaatgtagatcttcctccactttgttc atcaagatttcgacctggacctccatgcgaagagggtcaagcagctagtcagtttattgctgatatcattgaaaattcac agatgataatgaaagaagatctatgcattttagatggaaagattgtatgggttctatattgtgacattatatgcttagac tatgatggaaaccttcttgatgcctgcatgtgtgctttcttagcagctctgaaaaatgtgcttttgcctgttgttgcaat aaatgcagaaactggtttggtggaagttaatttgaaagagaagaatcctttgactattaaaaagcaaccagtggcaacgt catttgtgttgtttgacacattagtggtagttgacccaactgcagaagaagaagacttggcatctgggactttaactatt gtgattattgaaaatgacaaactgtgttctgttcataaaccaggtggaagtacaataacagaagcaaagcttcaagactg tatcagtcgggcaaaaacacgacataaagaagtacaaaaactaatggataaaataatcaaaaatgtataattagtaaaag gtgtatttactatttgctca |
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Protein
| Protein ID | habu1_s2206_g07881.t1 |
|---|---|
| Definition | - |
>habu1_s2206_g07881.t1 MTATITAAFRTVEPLEYYRRFLKENCRPDGRDLGEFRTTTINIGSITTADGSALVKLGNTTVICGIKAEFATPTVDSSNK GYIIPNVDLPPLCSSRFRPGPPCEEGQAASQFIADIIENSQMIMKEDLCILDGKIVWVLYCDIICLDYDGNLLDACMCAF LAALKNVLLPVVAINAETGLVEVNLKEKNPLTIKKQPVATSFVLFDTLVVVDPTAEEEDLASGTLTIVIIENDKLCSVHK PGGSTITEAKLQDCISRAKTRHKEVQKLMDKIIKNV |
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