Gene
| Gene Model ID | habu1_s2255_g08048 |
|---|---|
| Locus | habu1_scaffold2255 : 297408 ... 387075 : - |
| To GenomeBrowser | habu1_scaffold2255:297408..387075 |
| Genes list of scaffold | habu1_scaffold2255 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| collagen and calcium-binding egf domain-containing protein 1 | GO:0005488 GO:0051240 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2255_g08048.t3 | 2 | 1 | cEGF | 111 | 137 | 1.0e-07 | 31.4 | 1.9e-06 | 0.0039 | 16.7 |
| habu1_s2255_g08048.t3 | 1 | 1 | EGF_CA | 134 | 174 | 1.1e-09 | 38.1 | 5.2e-13 | 1.1e-09 | 38.1 |
| habu1_s2255_g08048.t3 | 1 | 1 | FXa_inhibition | 140 | 174 | 2.8e-07 | 30.5 | 2.3e-08 | 5.0e-05 | 23.3 |
| habu1_s2255_g08048.t3 | 1 | 1 | EGF | 145 | 166 | 8.5e-06 | 25.6 | 3.8e-07 | 0.0008 | 19.3 |
| habu1_s2255_g08048.t3 | 2 | 2 | cEGF | 156 | 175 | 1.0e-07 | 31.4 | 1.0e-08 | 2.2e-05 | 23.9 |
| habu1_s2255_g08048.t3 | 2 | 1 | Collagen | 244 | 286 | 7.7e-13 | 47.7 | 3.1e-10 | 6.7e-07 | 28.7 |
| habu1_s2255_g08048.t3 | 2 | 2 | Collagen | 296 | 339 | 7.7e-13 | 47.7 | 6.3e-09 | 1.3e-05 | 24.5 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.4 |
| Venom grand-1 | 1.7 |
| Pit, infrared sensing | 1.7 |
| Nose | 1.8 |
| Brain-1 | 1.0 |
| Eye | 1.0 |
| fetal fibroblast | 15.3 |
| venom gland-2 | 1.2 |
| Brain-2 | 0.6 |
| Spleen | 0.2 |
| Lung | 3.6 |
| Liver | 0.6 |
| Kidney | 2.6 |
| Pancreas | 0.1 |
| Small intestine | 1.4 |
| Large intestine | 2.2 |
| Stomach | 0.3 |
| heart | 0.1 |
| ovary | 1.4 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s2255_g08048.t1 |
|---|---|
| Definition | - |
>habu1_s2255_g08048.t1 agcaacgaatctcagctgggcccttgtcctgacgatctttggacctcctcccagctgcttggtaaagcttgtccacctcc ttgtggatggttgcaatctctggagcgcttcgagtgggccgcagattcttgaccgctccacctgcagctttctctgccgt aacctctcgcagagcatcttggaaagagatattttccttggcgaacagcttctgctccgcacgcaccctccagcgatttc gtactggcaggataaacgctgacttcaacgccgttgttcctcttccggacttctttgggaaaaagtgctgtaaaggttat aagtttgttcttggacaatgcattcccgaagactatgatgtttgtgcagatgctccttgtgaacagcagtgcaccgacaa ctttggtcgagtcttgtgtacgtgctaccctggttatcggtatgatcgtgaaagacacaggaaccgagaaaaaccctatt gcttagatgttgatgagtgtgccacaagcagtgagactctctgccctcacatctgtgtaaatactcttggtagctatcgg tgtgaatgtcacgaaggatacatacgtgaagatgatgggaaagtatgcaccaaaggagataaagcaggcttttctgaaaa ggtggacaatgtggtgaaaccgggggcttgttgtgcctcctgcagagaattccaccagatcaaacagacggtactgcaac tgaagcaaaaggtttcttggctaccaaataatgctgttgaccttagcaaaccaatcacaggagaaaaagtacttgcatcc aatgcttacatacctggccctcctgggcagccaggggatcagggtcctccaggggttgcaggtccaaaagggagccctgg attccctggatcccagggtcctccaggggtgccaggccctagaggaggcatggggccgatgggaccgtctccagacctct ctcacattaaacaaggcaaaagagggcctgtgggtcctccaggggcaccaggaagagatggagcaaagggtgagagaggt gcaccaggagaaaagggtccacccgggccaccaggttcctttgacttcttgctgttgatgatggcagatatcaggaatga tattgctgagctgcaagagaggatctttggacacaggactcattcatcagcagaggagtttccactacctcaggaatttg ctaactaccaggatgtagacattggatctggagaggactataaacagaggactataccaaaagacaccagaacacctgaa gaaggcaatcattaaaaaaggacctctgctttggaaagactgaaaaggggttgggttgtgatccacaggtcacttaagcc agcttatttgcacgcacctcagtttagcagtagaaaaatcagtggacagtaagatcgtgtgtcaggagggttattacatt tctttccctaaacattatggtccaaacaatgaggcaagtttagccacttgtcatatgttgtatataggtccattatggga tcagaagccttttttgaaataaagaaaatcctatataagaacaaa |
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| Transcript ID | habu1_s2255_g08048.t2 |
| Definition | - |
>habu1_s2255_g08048.t2 acgtatttgtatttgacatgacgattcgtcaaggctcggtacaatgtggcgagacgcgattatgagatgcatgcgctcca cacaggagaattgttttgagagagtgcgccgcgcgcaagtggctttgtttacttaccgaaacacgacatttagacctgaa gaagcttcttggatgagaagtgaaatgtcttcaagaaaaatcaagaaaaagtgctgtaaaggttataagtttgttcttgg acaatgcattcccgaagactatgatgtttgtgcagatgctccttgtgaacagcagtgcaccgacaactttggtcgagtct tgtgtacgtgctaccctggttatcggtatgatcgtgaaagacacaggaaccgagaaaaaccctattgcttagatgttgat gagtgtgccacaagcagtgagactctctgccctcacatctgtgtaaatactcttggtagctatcggtgtgaatgtcacga aggatacatacgtgaagatgatgggaaagtatgcaccaaaggagataaagcaggcttttctgaaaaggtggacaatgtgg tgaaaccgggggcttgttgtgcctcctgcagagaattccaccagatcaaacagacggtactgcaactgaagcaaaaggtt tcttggctaccaaataatgctgttgaccttagcaaaccaatcacaggagaaaaagtacttgcatccaatgcttacatacc tggccctcctgggcagccaggggatcagggtcctccaggggttgcaggtccaaaagggagccctggattccctggatccc agggtcctccaggggtgccaggccctagaggaggcatggggccgatgggaccgtctccagacctctctcacattaaacaa ggcaaaagagggcctgtgggtcctccaggggcaccaggaagagatggagcaaagggtgagagaggtgcaccaggagaaaa gggtccacccgggccaccaggttcctttgacttcttgctgttgatgatggcagatatcaggaatgatattgctgagctgc aagagaggatctttggacacaggactcattcatcagcagaggagtttccactacctcaggaatttgctaactaccaggat gtagacattggatctggagaggactataaacagaggactataccaaaagacaccagaacacctgaagaaggcaatcatta aaaaaggacctctgctttggaaagactgaaaaggggttgggttgtgatccacaggtcacttaagccagcttatttgcacg cacctcagtttagcagtagaaaaatcagtggacagtaagatcgtgtgtcaggagggttattacatttctttccctaaaca ttatggtccaaacaatgaggcaagtttagccacttgtcatatgttgtatataggtccattatgggatcagaagccttttt tgaaataaagaaaatcctatataagaacaaa |
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| Transcript ID | habu1_s2255_g08048.t3 |
| Definition | - |
>habu1_s2255_g08048.t3 agcaacgaatctcagctgggcccttgtcctgacgatctttggacctcctcccagctgcttggtaaagcttgtccacctcc ttgtggatggttgcaatctctggagcgcttcgagtgggccgcagattcttgaccgctccacctgcagctttctctgccgt aacctctcgcagagcatcttggaaagagatattttccttggcgaacagcttctgctccgcacgcaccctccagcgatttc gtactggcaggataaacgctgacttcaacgccgttgttcctcttccggacttctttgggaaaaagtgctgtaaaggttat aagtttgttcttggacaatgcattcccgaagactatgatgtttgtgcagatgctccttgtgaacagcagtgcaccgacaa ctttggtcgagtcttgtgtacgtgctaccctggttatcggtatgatcgtgaaagacacaggaaccgagaaaaaccctatt gcttagatgttgatgagtgtgccacaagcagtgagactctctgccctcacatctgtgtaaatactcttggtagctatcgg tgtgaatgtcacgaaggatacatacgtgaagatgatgggaaagtatgcaccaaaggagataaagcaggcttttctgaaaa ggtggacaatgtggtgaaaccgggggcttgttgtgcctcctgcagagaattccaccagatcaaacagacggtactgcaac tgaagcaaaaggtttcttggctaccaaataatgctgttgaccttagcaaaccaatcacaggagaaaaagtacttgcatcc aatgcttacatacctggccctcctgggcagccaggggatcagggtcctccaggggttgcaggtccaaaagggagccctgg attccctggatcccagggtcctccaggggtgccaggccctagaggaggcatggggccgatgggaccgtctccagacctct ctcacattaaacaaggcaaaagagggcctgtgggtcctccaggggcaccaggaagagatggagcaaaggtggaaaggcag aaagtgaatgaaaagggtgagagaggtgcaccaggagaaaagggtccacccgggccaccaggttcctttgacttcttgct gttgatgatggcagatatcaggaatgatattgctgagctgcaagagaggatctttggacacaggactcattcatcagcag aggagtttccactacctcaggaatttgctaactaccaggatgtagacattggatctggagaggactataaacagaggact ataccaaaagacaccagaacacctgaagaaggcaatcattaaaaaaggacctctgctttggaaagactgaaaaggggttg ggttgtgatccacaggtcacttaagccagcttatttgcacgcacctcagtttagcagtagaaaaatcagtggacagtaag atcgtgtgtcaggagggttattacatttctttccctaaacattatggtccaaacaatgaggcaagtttagccacttgtca tatgttgtatataggtccattatgggatcagaagccttttttgaaataaagaaaatcctatataagaacaaa |
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Protein
| Protein ID | habu1_s2255_g08048.t1 |
|---|---|
| Definition | - |
>habu1_s2255_g08048.t1 MVAISGALRVGRRFLTAPPAAFSAVTSRRASWKEIFSLANSFCSARTLQRFRTGRINADFNAVVPLPDFFGKKCCKGYKF VLGQCIPEDYDVCADAPCEQQCTDNFGRVLCTCYPGYRYDRERHRNREKPYCLDVDECATSSETLCPHICVNTLGSYRCE CHEGYIREDDGKVCTKGDKAGFSEKVDNVVKPGACCASCREFHQIKQTVLQLKQKVSWLPNNAVDLSKPITGEKVLASNA YIPGPPGQPGDQGPPGVAGPKGSPGFPGSQGPPGVPGPRGGMGPMGPSPDLSHIKQGKRGPVGPPGAPGRDGAKGERGAP GEKGPPGPPGSFDFLLLMMADIRNDIAELQERIFGHRTHSSAEEFPLPQEFANYQDVDIGSGEDYKQRTIPKDTRTPEEG NH |
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| Protein ID | habu1_s2255_g08048.t2 |
| Definition | - |
>habu1_s2255_g08048.t2 MWRDAIMRCMRSTQENCFERVRRAQVALFTYRNTTFRPEEASWMRSEMSSRKIKKKCCKGYKFVLGQCIPEDYDVCADAP CEQQCTDNFGRVLCTCYPGYRYDRERHRNREKPYCLDVDECATSSETLCPHICVNTLGSYRCECHEGYIREDDGKVCTKG DKAGFSEKVDNVVKPGACCASCREFHQIKQTVLQLKQKVSWLPNNAVDLSKPITGEKVLASNAYIPGPPGQPGDQGPPGV AGPKGSPGFPGSQGPPGVPGPRGGMGPMGPSPDLSHIKQGKRGPVGPPGAPGRDGAKGERGAPGEKGPPGPPGSFDFLLL MMADIRNDIAELQERIFGHRTHSSAEEFPLPQEFANYQDVDIGSGEDYKQRTIPKDTRTPEEGNH |
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| Protein ID | habu1_s2255_g08048.t3 |
| Definition | - |
>habu1_s2255_g08048.t3 MVAISGALRVGRRFLTAPPAAFSAVTSRRASWKEIFSLANSFCSARTLQRFRTGRINADFNAVVPLPDFFGKKCCKGYKF VLGQCIPEDYDVCADAPCEQQCTDNFGRVLCTCYPGYRYDRERHRNREKPYCLDVDECATSSETLCPHICVNTLGSYRCE CHEGYIREDDGKVCTKGDKAGFSEKVDNVVKPGACCASCREFHQIKQTVLQLKQKVSWLPNNAVDLSKPITGEKVLASNA YIPGPPGQPGDQGPPGVAGPKGSPGFPGSQGPPGVPGPRGGMGPMGPSPDLSHIKQGKRGPVGPPGAPGRDGAKVERQKV NEKGERGAPGEKGPPGPPGSFDFLLLMMADIRNDIAELQERIFGHRTHSSAEEFPLPQEFANYQDVDIGSGEDYKQRTIP KDTRTPEEGNH |
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