Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s2255_g08053
Locus habu1_scaffold2255 : 1010613 ... 1019533 : +
To GenomeBrowser habu1_scaffold2255:1010613..1019533
Genes list of scaffold habu1_scaffold2255

Annotation by Blast2GO
Annotation GO
activated rna polymerase ii transcriptional coactivator p15 GO:0003677 GO:0003713 GO:0005634 GO:0005667 GO:0006357 GO:0045941

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s2255_g08053.t1 1 1 PC4 67 120 1.5e-23 81.7 6.9e-27 2.6e-23 81.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s2255_g08053.t1 gi|602640250|ref|XP_007426940.1| PREDICTED: activated RNA polymerase II transcriptional coactivator p15 [Python bivittatus] 0.0
habu1_s2255_g08053.t1 gi|327282542|ref|XP_003226001.1| PREDICTED: activated RNA polymerase II transcriptional coactivator p15 isoform X1 [Anolis carolinensis] 0.0
habu1_s2255_g08053.t1 gi|700401988|ref|XP_009941930.1| PREDICTED: activated RNA polymerase II transcriptional coactivator p15 isoform X2 [Opisthocomus hoazin] 0.0
habu1_s2255_g08053.t1 gi|683940178|ref|XP_009098504.1| PREDICTED: activated RNA polymerase II transcriptional coactivator p15 [Serinus canaria] 0.0
habu1_s2255_g08053.t1 gi|663275317|ref|XP_008496365.1| PREDICTED: activated RNA polymerase II transcriptional coactivator p15 [Calypte anna] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 114.9
Venom grand-1 209.0
Pit, infrared sensing 131.7
Nose 117.2
Brain-1 70.8
Eye 86.4
fetal fibroblast 288.1
venom gland-2 169.8
Brain-2 65.7
Spleen 109.8
Lung 98.2
Liver 92.1
Kidney 97.9
Pancreas 101.6
Small intestine 81.0
Large intestine 103.3
Stomach 104.3
heart 181.9
ovary 159.0
cheek muscle 163.5

Transcript
Transcript IDhabu1_s2255_g08053.t1
Definition-
>habu1_s2255_g08053.t1
cggagtggaaggattcgagtggaataatgcctaaatcaaaggaacttgtgtcttcaagctcatcaggcagtgattcagat
gctgatacagcgcatgcaaatcatctgctgtcagaaaaaaggaaaaaacaggcagccccagaaaaacccgtaaagaaaca
gaagactggtgaaagttccagaggtgcagcctcctctgtgcaaagtagcaacagagatgagaatatgtttcagattggta
aaatgagatatgtcaatgttcgggattttaaaggtaaagtcctaattgatattcgagaatattggatggatcaagaaggt
gaaatgaaacctggcagaaaaggcatctctctaaatccagaacagtggagccagctgaaggaacagatttctgatattga
tgaagctgtaagaaaactgtaaagaagagccatacagaaactctactgttataggtttaagtagtctttttacattagca
ttcgtttttctaaactatttgttttccaagctattgtatatttggattgcaaacaatttgtaagatggaatgcttttttt
tattgtgcattaaaagtgtattctgagtgaagttacaaatgtgtatacttttattaaattggtgttatgttctcatatca
tgatgtaaaataaaacacatttaattaatacacttg

Protein
Protein IDhabu1_s2255_g08053.t1
Definition-
>habu1_s2255_g08053.t1
MPKSKELVSSSSSGSDSDADTAHANHLLSEKRKKQAAPEKPVKKQKTGESSRGAASSVQSSNRDENMFQIGKMRYVNVRD
FKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWSQLKEQISDIDEAVRKL

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Chromosome
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495