Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s2279_g08228
Locus habu1_scaffold2279 : 78166 ... 100117 : +
To GenomeBrowser habu1_scaffold2279:78166..100117
Genes list of scaffold habu1_scaffold2279

Annotation by Blast2GO
Annotation GO
vesicle transport protein use1 GO:0005783 GO:0060628 GO:0071786

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s2279_g08228.t2 1 1 Use1 1 213 0.0 283.7 0.0 0.0 283.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s2279_g08228.t2 gi|637379544|ref|XP_003230664.2| PREDICTED: vesicle transport protein USE1 [Anolis carolinensis] 0.0
habu1_s2279_g08228.t2 gi|449491657|ref|XP_002195816.2| PREDICTED: vesicle transport protein USE1 [Taeniopygia guttata] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 1.6
Venom grand-1 2.1
Pit, infrared sensing 1.6
Nose 1.6
Brain-1 1.9
Eye 2.0
fetal fibroblast 4.1
venom gland-2 2.9
Brain-2 1.9
Spleen 1.2
Lung 1.5
Liver 1.4
Kidney 1.8
Pancreas 1.5
Small intestine 0.8
Large intestine 0.6
Stomach 1.2
heart 2.2
ovary 7.0
cheek muscle 3.3

Transcript
Transcript IDhabu1_s2279_g08228.t1
Definition-
>habu1_s2279_g08228.t1
agaactgaagctggtccgactgttgagccgttgtgaggcgatggcggccgataaacgaaatccggacgagtggcgattgg
acaagtacgtagctgctctggaggagatgttactcacattgaagaaacactccagcaaaccagctcctgaagtactgaat
gaatattctcgtaaggtggattttttaaagggcttgctagaagcagagaaattgtcatcatcttctgagaaggcgctggc
aaatcagtttttggctcccgggagaactcctaccactgccaaggagcggaccccagcaacgaaaaccgtgcatctacaga
ccaaggcccgctttatgggcgagatgaggaatgagctgcttggtacagacccttcctatatcagtgatttggaagagaaa
aatttaaggaaacgcatgactccacttcctgacgagaagcagtcagctgccgaactggatgcggtcctgcagcatcatca
caacatccaggagaagttagctgaagagatgttgcacctggcacgcaatctcaagaacaacactcttgtagcacagaatg
tgattaagcaagataaccagaccttgacgcagtcactcaagctggctgaccataactttgagaaactaaagtctgaatcg
gatcgcctggagcagcatgccaagaaatctgtcaactggcttctctggctaatgttgatcgttgactttttaaagggtgg
catccaaagatcaagcacggatcaaatggcaaaattaaaagccattgtcagcccctcaggagattcaacttcagatgaag
tcaattcagaggaaagaagagccaatactctgtcataaaatgaacatagagagaaggggctcgatatggtcaaaatggtt
gatgagttgaaaaggcagggtatagcagaaaaacaataaaatggccagattgggtttctttgaataaacaaattatgaaa
tttcagcagt
Transcript IDhabu1_s2279_g08228.t2
Definition-
>habu1_s2279_g08228.t2
agaactgaagctggtccgactgttgagccgttgtgaggcgatggcggccgataaacgaaatccggacgagtggcgattgg
acaagtacgtagctgctctggaggagatgttactcacattgaagaaacactccagcaaaccagctcctgaagtactgaat
gaatattctcgtaaggtggattttttaaagggcttgctagaagcagagaaattgtcatcatcttctgagaaggcgctggc
aaatcagtttttggctcccgggagaactcctaccactgccaaggagcggaccccagcaacgaaaaccgtgcatctacaga
ccaaggcccgctttatgggcgagatgaggaatgagctgcttgatttggaagagaaaaatttaaggaaacgcatgactcca
cttcctgacgagaagcagtcagctgccgaactggatgcggtcctgcagcatcatcacaacatccaggagaagttagctga
agagatgttgcacctggcacgcaatctcaagaacaacactcttgtagcacagaatgtgattaagcaagataaccagacct
tgacgcagtcactcaagctggctgaccataactttgagaaactaaagtctgaatcggatcgcctggagcagcatgccaag
aaatctgtcaactggcttctctggctaatgttgatcgttgactttttaaagggtggcatccaaagatcaagcacggatca
aatggcaaaattaaaagccattgtcagcccctcaggagattcaacttcagatgaagtcaattcagaggaaagaagagcca
atactctgtcataaaatgaacatagagagaaggggctcgatatggtcaaaatggttgatgagttgaaaaggcagggtata
gcagaaaaacaataaaatggccagattgggtttctttgaataaacaaattatgaaatttcagcagt

Protein
Protein IDhabu1_s2279_g08228.t1
Definition-
>habu1_s2279_g08228.t1
MAADKRNPDEWRLDKYVAALEEMLLTLKKHSSKPAPEVLNEYSRKVDFLKGLLEAEKLSSSSEKALANQFLAPGRTPTTA
KERTPATKTVHLQTKARFMGEMRNELLGTDPSYISDLEEKNLRKRMTPLPDEKQSAAELDAVLQHHHNIQEKLAEEMLHL
ARNLKNNTLVAQNVIKQDNQTLTQSLKLADHNFEKLKSESDRLEQHAKKSVNWLLWLMLIVDFLKGGIQRSSTDQMAKLK
AIVSPSGDSTSDEVNSEERRANTLS
Protein IDhabu1_s2279_g08228.t2
Definition-
>habu1_s2279_g08228.t2
MAADKRNPDEWRLDKYVAALEEMLLTLKKHSSKPAPEVLNEYSRKVDFLKGLLEAEKLSSSSEKALANQFLAPGRTPTTA
KERTPATKTVHLQTKARFMGEMRNELLDLEEKNLRKRMTPLPDEKQSAAELDAVLQHHHNIQEKLAEEMLHLARNLKNNT
LVAQNVIKQDNQTLTQSLKLADHNFEKLKSESDRLEQHAKKSVNWLLWLMLIVDFLKGGIQRSSTDQMAKLKAIVSPSGD
STSDEVNSEERRANTLS

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