Gene
| Gene Model ID | habu1_s2279_g08230 |
|---|---|
| Locus | habu1_scaffold2279 : 271138 ... 279025 : - |
| To GenomeBrowser | habu1_scaffold2279:271138..279025 |
| Genes list of scaffold | habu1_scaffold2279 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| peroxisomal membrane protein 11c isoform x2 | GO:0005779 GO:0016559 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2279_g08230.t2 | 1 | 1 | PEX11 | 43 | 161 | 1.8e-33 | 115.7 | 2.9e-37 | 2.2e-33 | 115.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2279_g08230.t2 | gi|148235995|ref|NP_001090009.1| | peroxisomal biogenesis factor 11 gamma [Xenopus laevis] | 0.0 |
| habu1_s2279_g08230.t2 | gi|118404718|ref|NP_001072770.1| | peroxisomal membrane protein 11C [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.8 |
| Venom grand-1 | 3.9 |
| Pit, infrared sensing | 5.6 |
| Nose | 6.8 |
| Brain-1 | 1.3 |
| Eye | 4.2 |
| fetal fibroblast | 5.7 |
| venom gland-2 | 3.8 |
| Brain-2 | 1.4 |
| Spleen | 3.5 |
| Lung | 5.0 |
| Liver | 11.0 |
| Kidney | 6.1 |
| Pancreas | 6.7 |
| Small intestine | 4.4 |
| Large intestine | 4.3 |
| Stomach | 5.5 |
| heart | 2.7 |
| ovary | 0.7 |
| cheek muscle | 1.4 |
Transcript
| Transcript ID | habu1_s2279_g08230.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08230.t1 ctgatccctcccctccgcctttgggatccggcagcccagcctccgctccacacccgaccgagaaacgaggtggccttaaa cgagcaatgccgacagcgacggagaaggaatgcttaaaagagcaaccttctttccctcccgactcgccttcgggtgacgc gattggacgccaacccggaagtgttgctatggcggcggtgtcccccttcagtggcctggtctccgtgttggaaacctacc ggggcagagatcgagtgatacgcaccatctgttatggctgccagctggctggagggattttggtggccagaagacaacct ggagaatcaccacttggtcagggcctcctggctgtctcagcacaactgagtcactgtcgaacagtactacgcctttttga cgacctaaccatgctttcctatagctgccaatatggactggggaacaaggaggaggatacagcaatgcgctggctttcca tcttcaacaatatagctgaccagctttattacccctgcgagcacgtggcctgggctgctgatgctgaaattatccatgcc aactcaagtaggtggtggacactcagtacaactctctggggcttttctctgctgctggggattgcacgatctctccgaat tttattactcctaagacgaaagcagcatacagaatccagagacttcaatcaaaaaacaagggctgaaatgcacatacaag ccttgaccatcatcagcaacctggctgacctcgccaatgccatccactggttgcctccaggaattctttgggctggaaag ttttctccatggtttgtgggcctcatgggaagtatttcttccttcattgggatctatcaaaactatgcagggggcagttg tgcagcagtttgaacaggaacttcacaatactggattgaatggagaaagggggctatcgcaggaattcataaaacgttac ataatctctgtttaaatggggagagtaattcctattatggtggaggctagattggcattagattcttctattaaaacagg gtgctccttctatataaatcataggcactttcctggaggatcagtttgtgagaccttatagagtttagtttacctgcttc actctgtatataggtagtccttgacttacaaccacattggagcctgaaatttcagttatagtcattgcaattgcaagtca aagcaccacatgaccagacttgattttacaattgtttttacaatggtggtaaagtgagtcactctggttgttaaacgaat aacatggttgttaagcaaatctgttcttactaaatgggcatttttttgctggaaattgcaagaaaacccagaaactggtg aaaacgtcacaaattgtggtcacatgttcacaggatgctacaatcagtcataaatgggagccaattgccttgcgcccaaa tcacaggaacgcggggagaggggtagcagtcataaactcaaggaccagttgtatgtagctgtttttaacagtctgttgta atttcaacaaggagcaggtgtctgccgtctagttaaataatttggcttttttatctgaagaatacaatcttgttatatat gtacatcattctaatgtgaaacaattagggctgataataaaagatacaattttaacaattttc |
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| Transcript ID | habu1_s2279_g08230.t2 |
| Definition | - |
>habu1_s2279_g08230.t2 ctgatccctcccctccgcctttgggatccggcagcccagcctccgctccacacccgaccgagaaacgaggtggccttaaa cgagcaatgccgacagcgacggagaaggaatgcttaaaagagcaaccttctttccctcccgactcgccttcgggtgacgc gattggacgccaacccggaagtgttgctatggcggcggtgtcccccttcagtggcctggtctccgtgttggaaacctacc ggggcagagatcgagtgatacgcaccatctgttatggctgccagctggctggagggattttggtggccagaagacaacct ggagaatcaccacttggtcagggcctcctggctgtctcagcacaactgagtcactgtcgaacagtactacgcctttttga cgacctaaccatgctttcctatagctgccaatatggactggggaacaaggaggaggatacagcaatgcgctggctttcca tcttcaacaatatagctgaccagctttattacccctgcgagcacgtggcctgggctgctgatgctgaaattatccatgcc aactcaaatctctccgaattttattactcctaagacgaaagcagcatacagaatccagagacttcaatcaaaaaacaagg gctgaaatgcacatacaagccttgaccatcatcagcaacctggctgacctcgccaatgccatccactggttgcctccagg aattctttgggctggaaagttttctccatggtttgtgggcctcatgggaagtatttcttccttcattgggatctatcaaa actatgcagggggcagttgtgcagcagtttgaacaggaacttcacaatactggattgaatggagaaagggggctatcgca ggaattcataaaacgttacataatctctgtttaaatggggagagtaattcctattatggtggaggctagattggcattag attcttctattaaaacagggtgctccttctatataa |
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Protein
| Protein ID | habu1_s2279_g08230.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08230.t1 MPTATEKECLKEQPSFPPDSPSGDAIGRQPGSVAMAAVSPFSGLVSVLETYRGRDRVIRTICYGCQLAGGILVARRQPGE SPLGQGLLAVSAQLSHCRTVLRLFDDLTMLSYSCQYGLGNKEEDTAMRWLSIFNNIADQLYYPCEHVAWAADAEIIHANS SRWWTLSTTLWGFSLLLGIARSLRILLLLRRKQHTESRDFNQKTRAEMHIQALTIISNLADLANAIHWLPPGILWAGKFS PWFVGLMGSISSFIGIYQNYAGGSCAAV |
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| Protein ID | habu1_s2279_g08230.t2 |
| Definition | - |
>habu1_s2279_g08230.t2 MPTATEKECLKEQPSFPPDSPSGDAIGRQPGSVAMAAVSPFSGLVSVLETYRGRDRVIRTICYGCQLAGGILVARRQPGE SPLGQGLLAVSAQLSHCRTVLRLFDDLTMLSYSCQYGLGNKEEDTAMRWLSIFNNIADQLYYPCEHVAWAADAEIIHANS NLSEFYYS |
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