Gene
| Gene Model ID | habu1_s2279_g08239 |
|---|---|
| Locus | habu1_scaffold2279 : 712234 ... 721020 : - |
| To GenomeBrowser | habu1_scaffold2279:712234..721020 |
| Genes list of scaffold | habu1_scaffold2279 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2279_g08239.t1 | 3 | 1 | WD40 | 39 | 68 | 1.0e-15 | 56.8 | 3.2e-06 | 0.047 | 13.5 |
| habu1_s2279_g08239.t1 | 3 | 2 | WD40 | 281 | 313 | 1.0e-15 | 56.8 | 3.8e-10 | 5.6e-06 | 26.0 |
| habu1_s2279_g08239.t1 | 3 | 3 | WD40 | 332 | 360 | 1.0e-15 | 56.8 | 1.0e-08 | 0.00015 | 21.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2279_g08239.t1 | gi|602635375|ref|XP_007424554.1| | PREDICTED: NACHT and WD repeat domain-containing protein 1 [Python bivittatus] | 0.0 |
| habu1_s2279_g08239.t1 | gi|641771585|ref|XP_008169823.1| | PREDICTED: NACHT and WD repeat domain-containing protein 1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2279_g08239.t1 | gi|591355756|ref|XP_007072182.1| | PREDICTED: LOW QUALITY PROTEIN: NACHT and WD repeat domain-containing protein 1 [Chelonia mydas] | 0.0 |
| habu1_s2279_g08239.t1 | gi|558159524|ref|XP_006122519.1| | PREDICTED: NACHT and WD repeat domain-containing protein 1 [Pelodiscus sinensis] | 0.0 |
| habu1_s2279_g08239.t1 | gi|564230282|ref|XP_006259573.1| | PREDICTED: NACHT and WD repeat domain-containing protein 1 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 0.1 |
| Nose | 3.0 |
| Brain-1 | 0.0 |
| Eye | 0.1 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.2 |
| Brain-2 | 0.1 |
| Spleen | 0.0 |
| Lung | 0.1 |
| Liver | 0.2 |
| Kidney | 0.1 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.3 |
| Stomach | 0.2 |
| heart | 0.1 |
| ovary | 0.0 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s2279_g08239.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08239.t1 gcaggaatgtgtgtcaatttggatgcataagccatggttcagttgtgttatttgccaatgcaatgagcttttcatacaca agagtgccagagcagaacctgacatgtgttgggcaccgtgtaagagtttttctaggcaatgtgacaggattccatcaact cctggcctcagatttgctgcattctgctgaggtttgtgcagctgctatttcaacagacaatagcaccatcgtcacaagct cccaggatgaatgcatatgggtctggtgtctagcgaaacagggtttgctgacagatgttctgaccgatacagggatgcct tctacacacctggctctctgggatgtcacgctggtgtcagcctcttgccatgcatcttatcttagaatctgggaccttag ctgtgatcgcaagcacaaactactcccaccttgtatggcaagcaagcgttgcattgggctttcccacaatgccaaataca tttattttccccaagcttactgcagctctaatgttgtcatttgggatacagaggcagccatagaaattctggtcccagct gtggtcgtaaggagtacctataacaggagggatcagcagtgcttgctgaggcaagatgttggttgcatccctccagcaga gaaccgaaagcctatctgcaacctggcactcaatcagaatgaagatcagctggcagttgcctgtgatgatcttgtgcagg tactggatctgcatcaggaagaacagggtctcttgattgaccggccggcttacaccttttacacacagatccctggagca acaatttctagtgtggctcttctgtctggataccgagtgctctatggaatgaccaatggggagctcttcacgtactactg cttggaggcccacgtgttcccgctagaagctcatgggaactgcattacctgcctgaagaccagccatggagagaaatggc tgctgagtggttcagaagattcactgctgtgtctctgggatgttcagctctgctcctgggagcaccagatgtttttccag aagcaagattccttttcccatggcattatctgtgcatgcttttcaaaggatgaccagtacttgttcaccagctctttgga tcagtgtgttacagtgtgggatgtctcacggggggccctcttagcagttcagtttgtgcatgcaaaaattaccagaatgg tgtcaacaggtgaaggctttgttgcaacaacacaagttggctacctcatgcgggagagattccgctgcccacaggtcatc aactctcaccctgatctgctcagcagtgttaaagcaacgtacacagtgaaatctcagccaaaagagaggcaggatccagg agagattcggggaaatctaaggaacgctcaaactgtcaccaacaagctgtcacagatttgtaggattgtgtgaatttttt tttgtttctttagtttctttttattctatggggaaaaatcataatattaaataaaataaagaagtatgagtttataggat tt |
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Protein
| Protein ID | habu1_s2279_g08239.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08239.t1 MSFSYTRVPEQNLTCVGHRVRVFLGNVTGFHQLLASDLLHSAEVCAAAISTDNSTIVTSSQDECIWVWCLAKQGLLTDVL TDTGMPSTHLALWDVTLVSASCHASYLRIWDLSCDRKHKLLPPCMASKRCIGLSHNAKYIYFPQAYCSSNVVIWDTEAAI EILVPAVVVRSTYNRRDQQCLLRQDVGCIPPAENRKPICNLALNQNEDQLAVACDDLVQVLDLHQEEQGLLIDRPAYTFY TQIPGATISSVALLSGYRVLYGMTNGELFTYYCLEAHVFPLEAHGNCITCLKTSHGEKWLLSGSEDSLLCLWDVQLCSWE HQMFFQKQDSFSHGIICACFSKDDQYLFTSSLDQCVTVWDVSRGALLAVQFVHAKITRMVSTGEGFVATTQVGYLMRERF RCPQVINSHPDLLSSVKATYTVKSQPKERQDPGEIRGNLRNAQTVTNKLSQICRIV |
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