Gene
| Gene Model ID | habu1_s2279_g08242 |
|---|---|
| Locus | habu1_scaffold2279 : 765742 ... 773550 : - |
| To GenomeBrowser | habu1_scaffold2279:765742..773550 |
| Genes list of scaffold | habu1_scaffold2279 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trimeric intracellular cation channel type a | GO:0005261 GO:0015672 GO:0016020 GO:0098655 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2279_g08242.t1 | 1 | 1 | TRIC | 24 | 216 | 0.0 | 303.0 | 0.0 | 0.0 | 302.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2279_g08242.t1 | gi|602635363|ref|XP_007424548.1| | PREDICTED: trimeric intracellular cation channel type A [Python bivittatus] | 0.0 |
| habu1_s2279_g08242.t1 | gi|564230286|ref|XP_006259575.1| | PREDICTED: trimeric intracellular cation channel type A [Alligator mississippiensis] | 0.0 |
| habu1_s2279_g08242.t1 | gi|541961949|ref|XP_005436485.1| | PREDICTED: trimeric intracellular cation channel type A-like [Falco cherrug] | 0.0 |
| habu1_s2279_g08242.t1 | gi|529444124|ref|XP_005241777.1| | PREDICTED: trimeric intracellular cation channel type A [Falco peregrinus] | 0.0 |
| habu1_s2279_g08242.t1 | gi|557292904|ref|XP_006028957.1| | PREDICTED: trimeric intracellular cation channel type A [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.8 |
| Venom grand-1 | 12.7 |
| Pit, infrared sensing | 2.6 |
| Nose | 0.9 |
| Brain-1 | 3.6 |
| Eye | 2.6 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 1.2 |
| Brain-2 | 3.8 |
| Spleen | 0.1 |
| Lung | 0.9 |
| Liver | 0.0 |
| Kidney | 1.5 |
| Pancreas | 0.0 |
| Small intestine | 0.4 |
| Large intestine | 0.9 |
| Stomach | 2.5 |
| heart | 2.6 |
| ovary | 1.2 |
| cheek muscle | 212.4 |
Transcript
| Transcript ID | habu1_s2279_g08242.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08242.t1 gtcaagcacatggagccagtcagctgggacaagattccgccctcgcactccattgcacacagatgatgctgcagggtttg ggcggagggcatggccgccatggcgctgctgggccacctgggtgatctgcggtgggtcgtggaggcggtgagtggccctg caggtgtggtggagctgtcccggaacagcccgttggcctcttgggtctgtgctatgctgtattgctttggcagctacatc cttgctgatctcctgcttggagaagcccctattgattacttcagcaacaactccagcatacttctggccacagctgtttg gtacctaatcttctattgccctatgaacttattttacaagtgtgtcagctttctgcctgtcaaactgatttttgtggcaa tgaaagaggtagtccgagttcgcaagatcgctgctggtgttcatcatgcccaccatcattaccaccatggttggctcatt atggtcataattggatttgtcaaaggttctggagttgccttgatgtccaactttgagcaattgctacgtggtgtctggaa gccagaaacaaatgagttccttcatatgacctttccatccaaggccagtctgtatggagcagtgctcttcacccttcagc aaacccagtggcttcccatctccaaagcaaccctcatcttcttcttcactatttttatgatcatctgtaaggtgtttttg acagcaactcactcccatagctcaccatttgcccctctggaaaatgtggtgtgccccatcctctttggctctgcatttgc cagtcatgataatcaccaccaccaccaccaccaccatggaggatcccaggagccatcccttccatcaccacctcagatgc cagccaaatcaagggaggagctcaatgaaggaacccggaaacggaaagccaagaaggtggaatgagcatcaagaaggctg acagatccatctgaaccaccaaaactttgctgcataccttgtgtgacttattgccttccaaagacatggttggaggaggc tcccaggaagatcagtcctcttcttctggcccctgccttggttttcctggcctgtcacctgtgaggcgcagaactaatgt ccaaatggacctttcattacagtttctagctccgcctttctattggtctcctccccttctgaagccacaccaatggaaaa gttgggatgtatttggtgtctcctccatatggcagagagagagagagagagagagcgcttcttagcctgcaaaacaatcc agggatctgcactcaggccatcattacaggactctaaggccagtgatatatttcaagggcagagagacgttccaaatgga gtgactgtcatttcactctctacatcaacattttggatgtcttatttggttgccatttgtataaaggccttgagcatagg agaagaccattgctgctgttgctgctgctgctgctctttgggctgttaatatatgtgcatttgtgttagcatgtt |
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Protein
| Protein ID | habu1_s2279_g08242.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08242.t1 MAAMALLGHLGDLRWVVEAVSGPAGVVELSRNSPLASWVCAMLYCFGSYILADLLLGEAPIDYFSNNSSILLATAVWYLI FYCPMNLFYKCVSFLPVKLIFVAMKEVVRVRKIAAGVHHAHHHYHHGWLIMVIIGFVKGSGVALMSNFEQLLRGVWKPET NEFLHMTFPSKASLYGAVLFTLQQTQWLPISKATLIFFFTIFMIICKVFLTATHSHSSPFAPLENVVCPILFGSAFASHD NHHHHHHHHGGSQEPSLPSPPQMPAKSREELNEGTRKRKAKKVE |
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