Gene
| Gene Model ID | habu1_s2279_g08251 |
|---|---|
| Locus | habu1_scaffold2279 : 931569 ... 994645 : + |
| To GenomeBrowser | habu1_scaffold2279:931569..994645 |
| Genes list of scaffold | habu1_scaffold2279 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2279_g08251.t3 | 2 | 1 | Tropomyosin | 73 | 146 | 0.0 | 335.2 | 3.6e-11 | 2.2e-08 | 33.4 |
| habu1_s2279_g08251.t3 | 1 | 1 | Tropomyosin_1 | 74 | 219 | 1.2e-40 | 138.6 | 2.7e-39 | 1.7e-36 | 125.2 |
| habu1_s2279_g08251.t3 | 2 | 1 | Laminin_II | 97 | 171 | 6.5e-08 | 32.4 | 2.5e-07 | 0.00016 | 21.4 |
| habu1_s2279_g08251.t3 | 2 | 2 | Tropomyosin | 115 | 349 | 0.0 | 335.2 | 0.0 | 0.0 | 315.4 |
| habu1_s2279_g08251.t3 | 2 | 2 | Laminin_II | 257 | 333 | 6.5e-08 | 32.4 | 4.4e-07 | 0.00027 | 20.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2279_g08251.t3 | gi|602654776|ref|XP_007433195.1| | PREDICTED: tropomyosin alpha-4 chain-like isoform X2 [Python bivittatus] | 0.0 |
| habu1_s2279_g08251.t3 | gi|697433390|ref|XP_009676176.1| | PREDICTED: tropomyosin alpha-4 chain isoform X1 [Struthio camelus australis] | 0.0 |
| habu1_s2279_g08251.t3 | gi|696986159|ref|XP_009561089.1| | PREDICTED: tropomyosin alpha-4 chain isoform X1 [Cuculus canorus] | 0.0 |
| habu1_s2279_g08251.t3 | gi|697433396|ref|XP_009676193.1| | PREDICTED: tropomyosin alpha-4 chain isoform X3 [Struthio camelus australis] | 0.0 |
| habu1_s2279_g08251.t3 | gi|527246476|ref|XP_005141572.1| | PREDICTED: tropomyosin alpha-4 chain-like isoform X2 [Melopsittacus undulatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 40.2 |
| Venom grand-1 | 11.9 |
| Pit, infrared sensing | 46.2 |
| Nose | 29.9 |
| Brain-1 | 3.9 |
| Eye | 12.5 |
| fetal fibroblast | 168.0 |
| venom gland-2 | 7.9 |
| Brain-2 | 3.6 |
| Spleen | 37.3 |
| Lung | 42.6 |
| Liver | 13.3 |
| Kidney | 16.2 |
| Pancreas | 2.5 |
| Small intestine | 18.8 |
| Large intestine | 31.1 |
| Stomach | 47.6 |
| heart | 4405.6 |
| ovary | 46.3 |
| cheek muscle | 15.0 |
Transcript
| Transcript ID | habu1_s2279_g08251.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08251.t1 tggaagctgtacccaccccattgccggcaatggcaaaactgtcccgatacgttgtgcgacgtcatgtgacgtcacatttt gttaccaaactagtaacatcatcaaataatcagtggaacaacctgcctccagaagttgtgaatgctccaacactggaagt ttataagaagagactggacagccatttgtctgaaatgcacctgaagccacctttacttcaaattgcaaagatggaagcca tcaagaagaagatgcagatgctgaaactggacaaggagaatgccattgaccgagcagaacaggcggaggctgacaagaaa gcagctgaggacaagtgcaagcaggtggaggatgagctgatggctttgcagaagaagttgaaaggaacagaagatgagct ggataagtactctgaagctcttaaggatgcccaggagaaattggagcaagctgaaaagaaagctaccgatgctgaaggag aggtggccgctcttaatcgccggatccagctggtggaagaagagttggatcgcgcccaagagcgcctggccacagctctg caaaaactggaggaggcagagaaagcagctgatgagagtgagagaggtatgaaggtcattgaaaacagagctatgaagga tgaggagaaaatggagattcaagagatgcaactgaaggaagccaagcacattgctgaagaagctgaccgcaaatatgagg aggttgcccgtaagcttgtcattctggagggagaactggaaagagctgaagaacgagctgaggtgtctgaactgaaatgc agtgacctggaggaagaactcaagaatgtcaccaacaacctgaagtcccttgaggctcagtcagagaagtattctgaaaa agaggacaagtatgaagaggaaatcaagcttctgactgacaagctgaaggaggctgaaacacgagctgagtttgcagaga gaacagttgctaaactggaaaagagcattgatgatttggaagatgagctgtatgctcaaaagttgaaatacaaggccatc agcgaggaattggaccacgcactcaatgatatgacttctttgtagataaatacaatggggcttcctgtcctgctgggtgt ttctactgagcagcttctgctttctttgcctctgtgtgctttcacaaccctttctctgtaaaaactgcactgcaattaaa tacatatatatatatatatttcaagaatcttttctcatttgctgtctttctctgtttatgaagtacaaggcatttgttcc ttgtttcctgtataaaatgatagtccctttaagtttagcttgaacacttgattcaacagaacagttcagagttggagatt agttatgtaactttctcctgaaaataaaattttgattttccatttgattt |
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| Transcript ID | habu1_s2279_g08251.t2 |
| Definition | - |
>habu1_s2279_g08251.t2 tggaagctgtacccaccccattgccggcaatggcaaaactgtcccgatacgttgtgcgacgtcatgtgacgtcacatttt gttaccaaactagtaacatcatcaaataatcagtggaacaacctgcctccagaagttgtgaatgctccaacactggaagt ttataagaagagactggacagccatttgtctgaaatgcacctgaagccacctttacttcaaattgcaaagatggaagcca tcaagaagaagatgcagatgctgaaactggacaaggagaatgccattgaccgagcagaacaggcggaggctgacaagaaa gcagctgaggacaagtgcaagcaggtggaggatgagctgatggctttgcagaagaagttgaaaggaacagaagatgagct ggataagtactctgaagctcttaaggatgcccaggagaaattggagcaagctgaaaagaaagctaccgatcaaccggagc cgcatccttgccgccgctgccgccgcggctcacgtgtagctctcgccgccgttctcgcgaccggacccgactctgaccca gccgccgctaggatggcagccactacaggttcgctggaggcggtgaagcgcaagatccaggcgctgcagcaggaagccga cgaggccgaggaccgcgcccaaatcttgcaacgccagcgcgaccaggagcgggagctgcgcgagaaagctgaaggagagg tggccgctcttaatcgccggatccagctggtggaagaagagttggatcgcgcccaagagcgcctggccacagctctgcaa aaactggaggaggcagagaaagcagctgatgagagtgagagaggtatgaaggtcattgaaaacagagctatgaaggatga ggagaaaatggagattcaagagatgcaactgaaggaagccaagcacattgctgaagaagctgaccgcaaatatgaggagg ttgcccgtaagcttgtcattctggagggagaactggaaagagctgaagaacgagctgaggtgtctgaactgaaatgcagt gacctggaggaagaactcaagaatgtcaccaacaacctgaagtcccttgaggctcagtcagagaagtattctgaaaaaga ggacaagtatgaagaggaaatcaagcttctgactgacaagctgaaggaggctgaaacacgagctgagtttgcagagagaa cagttgctaaactggaaaagagcattgatgatttggaagatgagctgtatgctcaaaagttgaaatacaaggccatcagc gaggaattggaccacgcactcaatgatatgacttctttgtagataaatacaatggggcttcctgtcctgctgggtgtttc tactgagcagcttctgctttctttgcctctgtgtgctttcacaaccctttctctgtaaaaactgcactgcaattaaatac atatatatatatatatttcaagaatcttttctcatttgctgtctttctctgtttatgaagtacaaggcatttgttccttg tttcctgtataaaatgatagtccctttaagtttagcttgaacacttgattcaacagaacagttcagagttggagattagt tatgtaactttctcctgaaaataaaattttgattttccatttgattt |
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| Transcript ID | habu1_s2279_g08251.t3 |
| Definition | - |
>habu1_s2279_g08251.t3 tggaagctgtacccaccccattgccggcaatggcaaaactgtcccgatacgttgtgcgacgtcatgtgacgtcacatttt gttaccaaactagtaacatcatcaaataatcagtggaacaacctgcctccagaagttgtgaatgctccaacactggaagt ttataagaagagactggacagccatttgtctgaaatgcacctgaagccacctttacttcaaattgcaaagatggaagcca tcaagaagaagatgcagatgctgaaactggacaaggagaatgccattgaccgagcagaacaggcggaggctgacaagaaa gcagctgaggacaagtgcaagcaggtggaggatgagctgatggctttgcagaagaagttgaaaggaacagaagatgagct ggataagtactctgaagctcttaaggatgcccaggagaaattggagcaagctgaaaagaaagctaccgatgctgaaggag aggtggccgctcttaatcgccggatccagctggtggaagaagagttggatcgcgcccaagagcgcctggccacagctctg caaaaactggaggaggcagagaaagcagctgatgagagtgagagaggtatgaaggtcattgaaaacagagctatgaagga tgaggagaaaatggagattcaagagatgcaactgaaggaagccaagcacattgctgaagaagctgaccgcaaatatgagg aggttgcccgtaagcttgtcattctggagggagaactggaaagagctgaagaacgagctgaggtgtctgaactgaaatgc agtgacctggaggaagaactcaagaatgtcaccaacaacctgaagtcccttgaggctcagtcagagaagtattctgaaaa agaggacaagtatgaagaggaaatcaagcttctgactgacaagctgaaggaggctgaaacacgagctgagtttgcagaga gaacagttgctaaactggaaaagagcattgatgatttggaagaaaaagttgccctagcaaaagaagagaatttgactctg caccgaacgctggatcaaaccctctgtgaactgggcagcatataaatctgtgggggaagcacccagatttggaagcccct acgtggtgcacaaccctaacacacttctacaccttatgaaatcctacatgggatcaacagacttgagtctaaaatcatct gaaggaagataaaacattaagatagtaacagttcacaaaaactacaaaaccaaaagtggcacgtacatttgctgagatat aatctgggtttacagtacctttcatttttgtccctttccggagcttaggtttaaaattaaatattgatgctataaaacca aaa |
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Protein
| Protein ID | habu1_s2279_g08251.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08251.t1 MAKLSRYVVRRHVTSHFVTKLVTSSNNQWNNLPPEVVNAPTLEVYKKRLDSHLSEMHLKPPLLQIAKMEAIKKKMQMLKL DKENAIDRAEQAEADKKAAEDKCKQVEDELMALQKKLKGTEDELDKYSEALKDAQEKLEQAEKKATDAEGEVAALNRRIQ LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILE GELERAEERAEVSELKCSDLEEELKNVTNNLKSLEAQSEKYSEKEDKYEEEIKLLTDKLKEAETRAEFAERTVAKLEKSI DDLEDELYAQKLKYKAISEELDHALNDMTSL |
|
| Protein ID | habu1_s2279_g08251.t2 |
| Definition | - |
>habu1_s2279_g08251.t2 MAKLSRYVVRRHVTSHFVTKLVTSSNNQWNNLPPEVVNAPTLEVYKKRLDSHLSEMHLKPPLLQIAKMEAIKKKMQMLKL DKENAIDRAEQAEADKKAAEDKCKQVEDELMALQKKLKGTEDELDKYSEALKDAQEKLEQAEKKATDQPEPHPCRRCRRG SRVALAAVLATGPDSDPAAARMAATTGSLEAVKRKIQALQQEADEAEDRAQILQRQRDQERELREKAEGEVAALNRRIQL VEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEG ELERAEERAEVSELKCSDLEEELKNVTNNLKSLEAQSEKYSEKEDKYEEEIKLLTDKLKEAETRAEFAERTVAKLEKSID DLEDELYAQKLKYKAISEELDHALNDMTSL |
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| Protein ID | habu1_s2279_g08251.t3 |
| Definition | - |
>habu1_s2279_g08251.t3 MAKLSRYVVRRHVTSHFVTKLVTSSNNQWNNLPPEVVNAPTLEVYKKRLDSHLSEMHLKPPLLQIAKMEAIKKKMQMLKL DKENAIDRAEQAEADKKAAEDKCKQVEDELMALQKKLKGTEDELDKYSEALKDAQEKLEQAEKKATDAEGEVAALNRRIQ LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILE GELERAEERAEVSELKCSDLEEELKNVTNNLKSLEAQSEKYSEKEDKYEEEIKLLTDKLKEAETRAEFAERTVAKLEKSI DDLEEKVALAKEENLTLHRTLDQTLCELGSI |
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