Gene
| Gene Model ID | habu1_s2279_g08252 |
|---|---|
| Locus | habu1_scaffold2279 : 995163 ... 1012968 : - |
| To GenomeBrowser | habu1_scaffold2279:995163..1012968 |
| Genes list of scaffold | habu1_scaffold2279 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-8a | GO:0003924 GO:0005525 GO:0005813 GO:0005886 GO:0006886 GO:0006904 GO:0007409 GO:0008021 GO:0008152 GO:0009306 GO:0016079 GO:0016459 GO:0017137 GO:0017157 GO:0019003 GO:0030140 GO:0030667 GO:0031489 GO:0031513 GO:0032482 GO:0032869 GO:0036064 GO:0042384 GO:0045335 GO:0048210 GO:0055038 GO:0070062 GO:0072659 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2279_g08252.t1 | 1 | 1 | Arf | 9 | 132 | 3.2e-14 | 52.5 | 3.2e-17 | 4.2e-14 | 52.1 |
| habu1_s2279_g08252.t1 | 1 | 1 | Ras | 10 | 170 | 0.0 | 218.4 | 0.0 | 0.0 | 217.7 |
| habu1_s2279_g08252.t1 | 1 | 1 | Miro | 10 | 124 | 1.3e-16 | 61.1 | 2.0e-19 | 2.6e-16 | 60.1 |
| habu1_s2279_g08252.t1 | 1 | 1 | Gtr1_RagA | 10 | 131 | 1.8e-07 | 30.5 | 2.7e-10 | 3.7e-07 | 29.5 |
| habu1_s2279_g08252.t1 | 1 | 1 | DUF1754 | 248 | 320 | 1.5e-06 | 28.7 | 9.7e-08 | 0.00013 | 22.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2279_g08252.t1 | gi|602654785|ref|XP_007433199.1| | PREDICTED: ras-related protein Rab-8A-like [Python bivittatus] | 0.0 |
| habu1_s2279_g08252.t1 | gi|71895669|ref|NP_001026675.1| | ras-related protein Rab-8A [Gallus gallus] | 0.0 |
| habu1_s2279_g08252.t1 | gi|530565089|ref|XP_005279108.1| | PREDICTED: ras-related protein Rab-8A [Chrysemys picta bellii] | 0.0 |
| habu1_s2279_g08252.t1 | gi|564230264|ref|XP_006259565.1| | PREDICTED: ras-related protein Rab-8A isoform X1 [Alligator mississippiensis] | 0.0 |
| habu1_s2279_g08252.t1 | gi|224087698|ref|XP_002197665.1| | PREDICTED: ras-related protein Rab-8A [Taeniopygia guttata] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 22.4 |
| Venom grand-1 | 23.6 |
| Pit, infrared sensing | 23.0 |
| Nose | 21.7 |
| Brain-1 | 13.3 |
| Eye | 22.8 |
| fetal fibroblast | 19.8 |
| venom gland-2 | 16.6 |
| Brain-2 | 16.7 |
| Spleen | 23.9 |
| Lung | 21.0 |
| Liver | 58.7 |
| Kidney | 41.8 |
| Pancreas | 42.3 |
| Small intestine | 28.5 |
| Large intestine | 22.8 |
| Stomach | 29.4 |
| heart | 31.0 |
| ovary | 106.7 |
| cheek muscle | 83.3 |
Transcript
| Transcript ID | habu1_s2279_g08252.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08252.t1 ccgtgaggacatatcagccaatggcagaccccgctgtcgtcaagaccgtcaactgaccaatgagattttcagtccaattt ttccggctataatctaggaagggaggacacctgatgacatttcagtcgcagtaaccaatgaaattccatcgttatgaaga tggacagctttgctggccggtagcaaaccccatagagccgccgggtcgaagaacatggcgaagacctacgactacctctt caagctgctgctgatcggcgattccggcgtgggcaagacgtgcgcgctcttccgcttcagcgaggacgccttcaacgcca ctttcatctccacaatcggtattgatttcaaaatcaggacaattgaactcgatggcaagaaaattaagctgcaaatatgg gacacagctgggcaagaacggttccggacaattacaactgcttattatagaggagcaatgggcatcatgctagtgtatga tattaccaatgagaaatcttttgaaaatattcagaactgggtcagaaacattgaagagcatgcatctccagatgtagaaa aaatgatccttggaaataagtgtgacataacccacaagcggcaggtttcccgagagcaaggtgaaaagctggctattagc tttggaattaaattcatggagaccagcgcaaaggcaaacattaatatagataatgcattttttacacttgccagagacat caaagcaaaaattgacaagaaactggaaggcaatagccctcagggcaatagcccaggaatgaagatcagcccagatcagc caaagaaaaggatccgcccgtttactcattccgaggtttcttgttgtttggttcgtttaacccggaactactttcgtgga cttgtccttacagccccagagagaggggggaggaaggggaaagttgatgtgctgaaagaaacgggggatatgtcggagta cgaacctgtccagcgaggcgctctgcgtctgaagggggacaccggcggcgggtctgcggggaaacgaaagaagaagaaag ataaagaaagaagcaagattgtagaccagattgtgagcagcaagaagcaggaggaagaagaggaaaagacacgggcgttg gacaaacgtactccagcacaactggcctatgaaaaaatgcaggaaaagcgacaaatagaacgaatcttgaaaaaagcatc caaaacccacaagcaaagagtagaggattttaataggcacttggatactctgactgagcattatgacatccccaaagtca gctggactaaatgagcatcttttccatcaacattttcttcttataaaatccttgtttctgaagtgaggacagacagaggt gttgagctgcaactcatttggcagaattgctgttttcttgtaacttccttttcttgatgaaacttgctttgaaagagaca cacggcacctattacttcaagtaactggcagttagctgtttaagctgttttaagttatttctgctttattgttgcacatt taaggacaaattaatccttggctaattatagacaagatcagacatatataaaacttaggatttatgcaaatact |
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Protein
| Protein ID | habu1_s2279_g08252.t1 |
|---|---|
| Definition | - |
>habu1_s2279_g08252.t1 MAKTYDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRG AMGIMLVYDITNEKSFENIQNWVRNIEEHASPDVEKMILGNKCDITHKRQVSREQGEKLAISFGIKFMETSAKANINIDN AFFTLARDIKAKIDKKLEGNSPQGNSPGMKISPDQPKKRIRPFTHSEVSCCLVRLTRNYFRGLVLTAPERGGRKGKVDVL KETGDMSEYEPVQRGALRLKGDTGGGSAGKRKKKKDKERSKIVDQIVSSKKQEEEEEKTRALDKRTPAQLAYEKMQEKRQ IERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKVSWTK |
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