Gene
| Gene Model ID | habu1_s2347_g08526 |
|---|---|
| Locus | habu1_scaffold2347 : 1085309 ... 1126861 : + |
| To GenomeBrowser | habu1_scaffold2347:1085309..1126861 |
| Genes list of scaffold | habu1_scaffold2347 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| activin d precursor | GO:0005179 GO:0005576 GO:0007165 GO:0008083 GO:0008283 GO:0040007 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2347_g08526.t1 | 1 | 1 | TGFb_propeptide | 70 | 256 | 5.2e-14 | 52.1 | 5.3e-17 | 5.2e-14 | 52.1 |
| habu1_s2347_g08526.t1 | 1 | 1 | TGF_beta | 279 | 323 | 4.5e-14 | 52.6 | 9.8e-17 | 9.7e-14 | 51.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2347_g08526.t1 | gi|602656823|ref|XP_007434140.1| | PREDICTED: inhibin beta B chain-like [Python bivittatus] | 0.0 |
| habu1_s2347_g08526.t1 | gi|327277852|ref|XP_003223677.1| | PREDICTED: inhibin beta E chain [Anolis carolinensis] | 0.0 |
| habu1_s2347_g08526.t1 | gi|641782645|ref|XP_005282788.2| | PREDICTED: inhibin beta C chain-like [Chrysemys picta bellii] | 0.0 |
| habu1_s2347_g08526.t1 | gi|148228929|ref|NP_001079333.1| | inhibin, beta C, gene 1 precursor [Xenopus laevis] | 0.0 |
| habu1_s2347_g08526.t1 | gi|301620203|ref|XP_002939470.1| | PREDICTED: inhibin beta C chain-like [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.0 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.0 |
| Brain-1 | 0.0 |
| Eye | 0.0 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 0.0 |
| Spleen | 0.0 |
| Lung | 0.0 |
| Liver | 4.7 |
| Kidney | 0.0 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.0 |
| ovary | 0.0 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s2347_g08526.t1 |
|---|---|
| Definition | - |
>habu1_s2347_g08526.t1 aagtcgaggactacccaaccggtcgtaagtcgaggactttccctgcccgggagtgccacgcatgcgtggttccgtcctct gcaccggccgaggcgtagctggcaagcggcagagacggagcaggccaaccaccagctggccctgcccaagggagcagtcc attttcagtgttgcaaaacataagcagtttgggaagtcaacaggcacaaatggcatttatgctaatgcagaacccaacaa atggatgcctccactggaacccagtgctgagaaagccttcctgattgaagtagccaagcagcagatactccagaaactga acctgagcgagaggcccaacatcacccaccctgtgccgcgtgtggcggtggccaatgccctgcggcggctacacatgggc aaaggctggacagatgggatggggcacttctccagctgggaaaaaacagagtcggatgagcaggggtacgagatcattag ttttgcagagacagagccttcaggcctccttcaattccagctcacccatacaagaggccaagccacgcacgtcctgaagg cccaattgtggctgcaccttagggcgcaccaaaacatcacaatacagatctatgtcgcaggacagccacaagaggtgctg ggacaccagcagctgggaagtcaggggaggagcggctggcactctttttccctgatgccagctttgcagaacttcttcga gcacgaagacaaaactttacgcttggagttgcagtgcgaaggctgccattccaacgttgtgtctttgatgacaaccagta gcaactctcatcagccgttcctggtggtgaaggcaaagataaaagaaactggccactgggtcaccaagcgcagcctgagc tgtgaccagaactcagatctgtgctgtcgaaaagactactatgtaaattttcgggacattggttggaatgactggatctt caagccagagggctatcagataaattattgcatgggcgaatgccccatgcacctggcagctgcctgctgcatccttgggg aaagtaatcaattagccattaaagtggaaaggcaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga agaagaagaagaagaagaagatcttccccaattaaaccactactggccatgaattctggaaattgtgttttaatgtatct gcaggcaggcatgcacaaacaaagaacaccttgctctttaaatctcctcctggtaggatctagctaagtgttgagcttcg tctaaatgaattgataaatgaattttctataaatacatttctttctgttacagttaagaaacctaccaactaacagttgc tcagtttgagtcttgcatttagaaatgttcgggtgcacacaaatggaacacttcaacttccaacacaaagctttctttaa atataacttactataaaacttactgattaaaagttaaatgttaattaaaatta |
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Protein
| Protein ID | habu1_s2347_g08526.t1 |
|---|---|
| Definition | - |
>habu1_s2347_g08526.t1 MRGSVLCTGRGVAGKRQRRSRPTTSWPCPREQSIFSVAKHKQFGKSTGTNGIYANAEPNKWMPPLEPSAEKAFLIEVAKQ QILQKLNLSERPNITHPVPRVAVANALRRLHMGKGWTDGMGHFSSWEKTESDEQGYEIISFAETEPSGLLQFQLTHTRGQ ATHVLKAQLWLHLRAHQNITIQIYVAGQPQEVLGHQQLGSQGRSGWHSFSLMPALQNFFEHEDKTLRLELQCEGCHSNVV SLMTTSSNSHQPFLVVKAKIKETGHWVTKRSLSCDQNSDLCCRKDYYVNFRDIGWNDWIFKPEGYQINYCMGECPMHLAA ACCILGESNQLAIKVERQEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDLPQLNHYWP |
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