Gene
| Gene Model ID | habu1_s2370_g08592 |
|---|---|
| Locus | habu1_scaffold2370 : 1 ... 9175 : - |
| To GenomeBrowser | habu1_scaffold2370:1..9175 |
| Genes list of scaffold | habu1_scaffold2370 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| threonine--trna cytoplasmic-like | EC:6.1.1.3 GO:0004829 GO:0005524 GO:0005739 GO:0006435 GO:0006544 GO:0006563 GO:0006566 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2370_g08592.t1 | 1 | 1 | TGS | 61 | 118 | 1.1e-12 | 47.5 | 9.6e-16 | 4.8e-12 | 45.5 |
| habu1_s2370_g08592.t1 | 1 | 1 | tRNA_SAD | 227 | 275 | 1.0e-08 | 34.9 | 4.1e-12 | 2.0e-08 | 33.9 |
| habu1_s2370_g08592.t1 | 1 | 1 | tRNA-synt_2b | 331 | 480 | 7.1e-40 | 136.4 | 2.20004e-43 | 1.1e-39 | 135.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2370_g08592.t1 | gi|602663715|ref|XP_007437483.1| | PREDICTED: threonine--tRNA ligase, cytoplasmic-like [Python bivittatus] | 0.0 |
| habu1_s2370_g08592.t1 | gi|637366603|ref|XP_008121241.1| | PREDICTED: threonine--tRNA ligase, mitochondrial [Anolis carolinensis] | 0.0 |
| habu1_s2370_g08592.t1 | gi|558142438|ref|XP_006118795.1| | PREDICTED: threonine--tRNA ligase, cytoplasmic-like [Pelodiscus sinensis] | 0.0 |
| habu1_s2370_g08592.t1 | gi|530603983|ref|XP_005293735.1| | PREDICTED: threonine--tRNA ligase, mitochondrial isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2370_g08592.t1 | gi|591387565|ref|XP_007068198.1| | PREDICTED: threonine--tRNA ligase, cytoplasmic-like [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.9 |
| Venom grand-1 | 6.6 |
| Pit, infrared sensing | 6.0 |
| Nose | 4.7 |
| Brain-1 | 3.6 |
| Eye | 4.0 |
| fetal fibroblast | 10.4 |
| venom gland-2 | 8.6 |
| Brain-2 | 4.2 |
| Spleen | 4.5 |
| Lung | 6.2 |
| Liver | 9.1 |
| Kidney | 8.3 |
| Pancreas | 7.3 |
| Small intestine | 6.2 |
| Large intestine | 5.6 |
| Stomach | 5.1 |
| heart | 5.3 |
| ovary | 12.3 |
| cheek muscle | 4.7 |
Transcript
| Transcript ID | habu1_s2370_g08592.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08592.t1 gcggcttcttctgggttttttttgcacgtgggaacgcgggacttgaaacgggtttcccgagagatgcggctccttcgcgt ctgggagaagatctgggcgaggaggggcggcctccgcagggaatacacgacagcagctctaccctcccaagttgcggagc gcctggcgttttaccagaggctgaaagctgcggcagacgagcgccaggctgagcaaaccctccgggagaaacggccaatc ctggtttccttgccaggcggccgaagcatcgagtgcgaatcatggaccaccaccccttatcagctggccttgcagatcag ccagagtctggccaaggccgtggtggcggcacgggtgaacggaagcctttacgacttggagcgtcctctggagggtgatg ccacggtggaatttgtggggtttgattctcaggccggacaagagctcttctggcattccagcgcccacctcctgggcgag gctgccgagcacttctacggtgccctgctgtgccacgggcccagcaccaagcagggcttcttctatgacctgtatttgga cgaggaacgcaatgtgtccagtaaagacctcccggccctggaagaactctgcaaagccaccatcgcggcccaggtgccct ttgagcggctggaggtttcccgggaagatctgctggagctcttcaagcacaaccgattcaaactggatatcatcgggcgg agggtgacgtctcggactgccacggtgtacaggtgcgggacgttggtcgacctctgccaggggccccatctccggcacag tggggaggtccgagccctgaaactcctcaagaacgccgccacctcctggcaaggccgaccctccggagagcccctgcagc gcatctacggcatctccttcccaagcgcccagcagttggccgcctgggagcgtgcccaggaagaggctgcccagcgggac caccggcgcatcgggaaggatcaggagcttttcttctttcatccgctgagtcctggaagctgcttcttcctacccaaagg ggcccacatctacaccaccctcatggacttcatcaagagcgagtacctcaagcggggcttttccgaagtgatcaccccca acatcttcaacgcgaaactgtgggaagtctccggtcactgggagcactacggcgagaacatgttctccttccccgtggaa gaccagatgttcgctctcaagcccatgaactgtcccggccactgccttatgttcggccaccggccccgatcctggcggga gctgcccctgcggctggctgacttcggggtgctccaccgcaacgagccctcgggggccctgacggggctgacgcgggtcc ggcgcttccagcaggacgatgcccacatcttctgtgccatggatcagctggagggcgagatcagtggctgcctggatttc ctgcaagccatttactccgtcttcggattcaccttccgcttcttcctctccacccgtcccgagcactttctcggggagcc ccctctctgggaccaagccgaacagctgctggaaaagagcctccgggattttggctggccgtgggagctcaaccccgggg acggcgccttctacgggcccaaggtggacattcagatccaggacgctttgggccgataccaccagtgtgccaccattcag ctggacttccagatgccgcttcgctttgacctctccttcaaggg |
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Protein
| Protein ID | habu1_s2370_g08592.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08592.t1 MRLLRVWEKIWARRGGLRREYTTAALPSQVAERLAFYQRLKAAADERQAEQTLREKRPILVSLPGGRSIECESWTTTPYQ LALQISQSLAKAVVAARVNGSLYDLERPLEGDATVEFVGFDSQAGQELFWHSSAHLLGEAAEHFYGALLCHGPSTKQGFF YDLYLDEERNVSSKDLPALEELCKATIAAQVPFERLEVSREDLLELFKHNRFKLDIIGRRVTSRTATVYRCGTLVDLCQG PHLRHSGEVRALKLLKNAATSWQGRPSGEPLQRIYGISFPSAQQLAAWERAQEEAAQRDHRRIGKDQELFFFHPLSPGSC FFLPKGAHIYTTLMDFIKSEYLKRGFSEVITPNIFNAKLWEVSGHWEHYGENMFSFPVEDQMFALKPMNCPGHCLMFGHR PRSWRELPLRLADFGVLHRNEPSGALTGLTRVRRFQQDDAHIFCAMDQLEGEISGCLDFLQAIYSVFGFTFRFFLSTRPE HFLGEPPLWDQAEQLLEKSLRDFGWPWELNPGDGAFYGPKVDIQIQDALGRYHQCATIQLDFQMPLRFDLSFK |
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