Gene
| Gene Model ID | habu1_s2370_g08600 |
|---|---|
| Locus | habu1_scaffold2370 : 138369 ... 141045 : - |
| To GenomeBrowser | habu1_scaffold2370:138369..141045 |
| Genes list of scaffold | habu1_scaffold2370 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| interferon-stimulated 20 kda exonuclease-like 2 | GO:0003676 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2370_g08600.t1 | 1 | 1 | RNase_T | 172 | 327 | 9.0e-23 | 81.3 | 7.9e-27 | 1.2e-22 | 80.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2370_g08600.t1 | gi|602665742|ref|XP_007438453.1| | PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2 [Python bivittatus] | 0.0 |
| habu1_s2370_g08600.t1 | gi|327287480|ref|XP_003228457.1| | PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2 [Anolis carolinensis] | 0.0 |
| habu1_s2370_g08600.t1 | gi|591380229|ref|XP_007064658.1| | PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2 [Chelonia mydas] | 0.0 |
| habu1_s2370_g08600.t1 | gi|530648929|ref|XP_005310999.1| | PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2 [Chrysemys picta bellii] | 0.0 |
| habu1_s2370_g08600.t1 | gi|557318930|ref|XP_006032643.1| | PREDICTED: interferon-stimulated 20 kDa exonuclease-like 2 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.7 |
| Venom grand-1 | 10.6 |
| Pit, infrared sensing | 7.9 |
| Nose | 7.0 |
| Brain-1 | 3.5 |
| Eye | 6.8 |
| fetal fibroblast | 10.7 |
| venom gland-2 | 25.9 |
| Brain-2 | 3.9 |
| Spleen | 12.1 |
| Lung | 8.4 |
| Liver | 18.7 |
| Kidney | 19.2 |
| Pancreas | 26.4 |
| Small intestine | 9.3 |
| Large intestine | 7.4 |
| Stomach | 9.8 |
| heart | 5.4 |
| ovary | 9.1 |
| cheek muscle | 23.1 |
Transcript
| Transcript ID | habu1_s2370_g08600.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08600.t1 tcgacgcccgctgctctgcgttggacggccggctcgctccgccgggcgccatgtcggacctgatgctcaacctggacacg gccctcccgccgccggcctcgaggagctccgcgggcggccaccggcaccagcgcttcgtcaagcgccgccagttcctgga gcggcgcggcttcctgaggcagaagcagctgcccggccagccccccgccctgcccagacggggccccgcctcggggggcg gctgcgcggggcccggccgggccaagaagaagcctgccaaggtggcagggagggagggcagccgagccccgcttgaggag ggtccccccggccggctcaagacgctgcccaaggagagcgccgctgcgggtaccccgtgccccggatcccggacggacgg cccctcctccgcggctgcctctgcctccaggaggacggggggcagcgctgggaagcccaacgggaccctctgcagccggg gggatgtcccccgagtcggcccgctggacgaaagcaaggctggcctccccgacgggccggtggtagccaagccgggcaaa atggtggccattgactgcgagatggtgggcactgggcccggtgggcgcaacagtgacctggcgcgatgcagcgtggtcag ctactatggcgacgtgatgtacgacaactacatccgtcccctgagccccatcaccaactaccggactcggtggagcggca tcaggcagcatcacatgagagacgctatccccttcaagctggcccagagagagattcttaagcttctctcggggaagatt gtcattggccacgcaatccacaacgacttcaaagccctcaaatatttccaccccaaatccttgaccagggacacctcaaa aatccccctgctcaatcggaaggccggcttccccgagaacgagtcggcctccctgaagcgactcaccaagcagctcctgc accgagacattcaggttggtcacaatggacactcctcggtggaagatgcccgggccaccatggagctgtacaaggtgggg ccttgatggaacccccccccggtcctctcagtcttggggaccccttaggctgggtgggggggtcgttcctgatggtcata ttgagcttgatggaagctgctgctattcctcttggaaacagcccccatggaaaggggctggcaagaggggctgcctcccc tgactgatccaggggttcaaagagacctgtctctgggtttggctggatgtgagcaacaccctcttttgggtaataaaagc agaaaatgggggtcttaaa |
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Protein
| Protein ID | habu1_s2370_g08600.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08600.t1 MSDLMLNLDTALPPPASRSSAGGHRHQRFVKRRQFLERRGFLRQKQLPGQPPALPRRGPASGGGCAGPGRAKKKPAKVAG REGSRAPLEEGPPGRLKTLPKESAAAGTPCPGSRTDGPSSAAASASRRTGGSAGKPNGTLCSRGDVPRVGPLDESKAGLP DGPVVAKPGKMVAIDCEMVGTGPGGRNSDLARCSVVSYYGDVMYDNYIRPLSPITNYRTRWSGIRQHHMRDAIPFKLAQR EILKLLSGKIVIGHAIHNDFKALKYFHPKSLTRDTSKIPLLNRKAGFPENESASLKRLTKQLLHRDIQVGHNGHSSVEDA RATMELYKVGP |
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