Gene
| Gene Model ID | habu1_s2370_g08602 |
|---|---|
| Locus | habu1_scaffold2370 : 143826 ... 145675 : - |
| To GenomeBrowser | habu1_scaffold2370:143826..145675 |
| Genes list of scaffold | habu1_scaffold2370 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial | GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2370_g08602.t1 | 1 | 1 | KOW | 48 | 78 | 7.7e-08 | 31.7 | 1.2e-11 | 1.7e-07 | 30.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2370_g08602.t1 | gi|327287466|ref|XP_003228450.1| | PREDICTED: 39S ribosomal protein L24, mitochondrial [Anolis carolinensis] | 0.0 |
| habu1_s2370_g08602.t1 | gi|573908194|ref|XP_006641816.1| | PREDICTED: probable 39S ribosomal protein L24, mitochondrial-like [Lepisosteus oculatus] | 0.0 |
| habu1_s2370_g08602.t1 | gi|82184451|sp|Q6GPM4.1|RM24_XENLA | Probable 39S ribosomal protein L24, mitochondrial [Xenopus laevis] | 0.0 |
| habu1_s2370_g08602.t1 | gi|530648918|ref|XP_005310994.1| | PREDICTED: 39S ribosomal protein L24, mitochondrial [Chrysemys picta bellii] | 0.0 |
| habu1_s2370_g08602.t1 | gi|269784691|ref|NP_001005120.2| | 39S ribosomal protein L24, mitochondrial [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 28.8 |
| Venom grand-1 | 108.5 |
| Pit, infrared sensing | 44.2 |
| Nose | 28.3 |
| Brain-1 | 14.5 |
| Eye | 35.0 |
| fetal fibroblast | 63.3 |
| venom gland-2 | 105.5 |
| Brain-2 | 17.2 |
| Spleen | 58.7 |
| Lung | 74.9 |
| Liver | 120.5 |
| Kidney | 60.1 |
| Pancreas | 110.7 |
| Small intestine | 90.4 |
| Large intestine | 73.1 |
| Stomach | 106.4 |
| heart | 80.5 |
| ovary | 60.5 |
| cheek muscle | 104.7 |
Transcript
| Transcript ID | habu1_s2370_g08602.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08602.t1 gcgctttcgtagctctggagcgcctgctaagactgcaaatcccagagtgcaccgcggccgtccgaccctcccgccccgcc gggaaggagctgcgaagcgcggcggaccaggcaccatgaggctgacgcggctgctggccatggcggagaagctgacgccg ccctgggcccccgagatgagccgggcgggccgggcgccccggaggaagaagcccgcggcggcggcgcccatcccggagga ggactggcaggtcttccgcggagacacggtgcagatcctgagcgggcgcgaggccggcaagcaaggccaggtcatcaagg tggacaaggagcagcagtcggtgctgttggaccgcctcaacatgggccactactatgcggacaccaaggagggcagggcc ctgtttgcccgagagaagccactggccttgaaggaggtgggcctggtggaccccacagacaggctgcccaccgaagtggt ttggcgctacacagagcagggcgagcgcgtgcgggtctccctccggacgggccggatcatccccaaacccgtggagcaga gggaggatggcatcatcccggagctgtgggtcgatggcccaaaggacacctccaccaaggacgccctggagaagacgtac accccgtccttgaagacctttcaagaggaaattatggagcggatgggaatcgtagagacacggcggcacaggaagtccta ttggtactgaggcttctgctcctcccttctccggggagagagacgcagcaggaaccagagaagttctgcattcacacaag cgttaacaggctgtcgtttatgaaaggctaagaggcaaccaagaataaacatcctttaatagaaaaataag |
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Protein
| Protein ID | habu1_s2370_g08602.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08602.t1 MRLTRLLAMAEKLTPPWAPEMSRAGRAPRRKKPAAAAPIPEEDWQVFRGDTVQILSGREAGKQGQVIKVDKEQQSVLLDR LNMGHYYADTKEGRALFAREKPLALKEVGLVDPTDRLPTEVVWRYTEQGERVRVSLRTGRIIPKPVEQREDGIIPELWVD GPKDTSTKDALEKTYTPSLKTFQEEIMERMGIVETRRHRKSYWY |
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