Gene
| Gene Model ID | habu1_s2370_g08604 |
|---|---|
| Locus | habu1_scaffold2370 : 218569 ... 224945 : - |
| To GenomeBrowser | habu1_scaffold2370:218569..224945 |
| Genes list of scaffold | habu1_scaffold2370 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| calsequestrin- partial | GO:0005509 GO:0005759 GO:0005790 GO:0005794 GO:0007029 GO:0007519 GO:0009408 GO:0010033 GO:0014804 GO:0014809 GO:0014894 GO:0030315 GO:0031674 GO:0033017 GO:0034220 GO:0045214 GO:0051258 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2370_g08604.t2 | 2 | 1 | Calsequestrin | 5 | 143 | 0.0 | 457.4 | 0.0 | 0.0 | 239.4 |
| habu1_s2370_g08604.t2 | 2 | 1 | Thioredoxin_6 | 83 | 143 | 1.8e-09 | 37.6 | 5.3e-06 | 0.013 | 15.2 |
| habu1_s2370_g08604.t2 | 2 | 2 | Calsequestrin | 144 | 263 | 0.0 | 457.4 | 0.0 | 0.0 | 229.5 |
| habu1_s2370_g08604.t2 | 2 | 2 | Thioredoxin_6 | 150 | 246 | 1.8e-09 | 37.6 | 2.1e-07 | 0.00052 | 19.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2370_g08604.t2 | gi|238231577|ref|NP_001153972.1| | cardiac calsequestrin-like protein precursor [Oncorhynchus mykiss] | 0.0 |
| habu1_s2370_g08604.t2 | gi|564244792|ref|XP_006261526.1| | PREDICTED: calsequestrin-1 [Alligator mississippiensis] | 0.0 |
| habu1_s2370_g08604.t2 | gi|557330634|ref|XP_006038188.1| | PREDICTED: calsequestrin-1 [Alligator sinensis] | 0.0 |
| habu1_s2370_g08604.t2 | gi|532051755|ref|XP_005368632.1| | PREDICTED: calsequestrin-1 [Microtus ochrogaster] | 0.0 |
| habu1_s2370_g08604.t2 | gi|348561624|ref|XP_003466612.1| | PREDICTED: calsequestrin-1 [Cavia porcellus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 49.2 |
| Venom grand-1 | 1319.9 |
| Pit, infrared sensing | 197.2 |
| Nose | 18.4 |
| Brain-1 | 3.3 |
| Eye | 32.8 |
| fetal fibroblast | 1.2 |
| venom gland-2 | 76.4 |
| Brain-2 | 2.8 |
| Spleen | 1.4 |
| Lung | 0.2 |
| Liver | 1.3 |
| Kidney | 1.8 |
| Pancreas | 1.2 |
| Small intestine | 8.5 |
| Large intestine | 0.5 |
| Stomach | 2.5 |
| heart | 2.6 |
| ovary | 4.5 |
| cheek muscle | 15448.1 |
Transcript
| Transcript ID | habu1_s2370_g08604.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08604.t1 gtacggtcaaacccttgggggaggggagtcagaggccggctccatcgggcacagcccggcgatgggtgcccgacagcttc ccaaagtgtttggtgcagagcagctggcccaggttttagggaagctggccagggggcctgctgggggctttcgcaactgg ttggccgacagtgtctggttggacatggacgatgaggaggatctgccctctgcggaggagttggaagactggatcgagga cgtgctggaaggagagataaacaccgaagacgacgatgacgacgatgacgacgacgacgacgacgatgacgatgacgact aagggctggcccctcccatgtttcgtgcaaggcgggcccgtctggggggctccacccaggtcccatcttgtcctccggca ccacacagctgacccaaccgcagcacctttggcttgcacgaaa |
|
| Transcript ID | habu1_s2370_g08604.t2 |
| Definition | - |
>habu1_s2370_g08604.t2 gccagtccagccagcgcccggcccggcctgcacctgaccaggagccgtgagagggaggggaggcaggaagggaaaccaag gcagccgtctgtgtctccctctttctcgccttggggaaggacccccggagccccttcgcggcaggatgaagtggctcggc ctgatcttggccgccctgctgctggccttggccggccccggggcccgtggcgaggaggggctggatttccccgaatacga cggcatcgaccgcgtcatcgacgtcaacatgaagaactacaaggccgtgctgaagaagtacgaggtgctggcgctgctct accacgagccggtgggcgacgacaaggcttcgcagaggcagtttgagatggaggagctgatcctggagttagcggcccaa gtcctggaagagaaagggatcggctttggcctggtggacgcagagaaagacgctgcggtggccaaaaaattagggctggc tgaagaagacagcgtgtacgtcttcaaggaggacgaagtcatcgaatacgatggggaattttcagcagacaccttggtgg agtttctccttgacgaagacgacatggatggcatccacattgtggccttcgcagaggaagacgatcctgacggttacgag ttcctggagatcctgaaagaagtcgcccaagacaacacagacaacccggagctcagcatcatctggatcgatcccgaaga attcccactgctgatcccatactgggagaaaaccttcgacattgacctgtcccggcctcatattggcatcgtcaacgtga cggacgccgacagtgtctggttggacatggacgatgaggaggatctgccctctgcggaggagttggaagactggatcgag gacgtgctggaaggagagataaacaccgaagacgacgatgacgacgatgacgacgacgacgacgacgatgacgatgacga ctaagggctggcccctcccatgtttcgtgcaaggcgggcccgtctggggggctccacccaggtcccatcttgtcctccgg caccacacagctgacccaaccgcagcacctttggcttgcacgaaa |
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Protein
| Protein ID | habu1_s2370_g08604.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08604.t1 MGARQLPKVFGAEQLAQVLGKLARGPAGGFRNWLADSVWLDMDDEEDLPSAEELEDWIEDVLEGEINTEDDDDDDDDDDD DDDDDD |
|
| Protein ID | habu1_s2370_g08604.t2 |
| Definition | - |
>habu1_s2370_g08604.t2 MKWLGLILAALLLALAGPGARGEEGLDFPEYDGIDRVIDVNMKNYKAVLKKYEVLALLYHEPVGDDKASQRQFEMEELIL ELAAQVLEEKGIGFGLVDAEKDAAVAKKLGLAEEDSVYVFKEDEVIEYDGEFSADTLVEFLLDEDDMDGIHIVAFAEEDD PDGYEFLEILKEVAQDNTDNPELSIIWIDPEEFPLLIPYWEKTFDIDLSRPHIGIVNVTDADSVWLDMDDEEDLPSAEEL EDWIEDVLEGEINTEDDDDDDDDDDDDDDDDD |
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