Gene
| Gene Model ID | habu1_s2370_g08616 |
|---|---|
| Locus | habu1_scaffold2370 : 337519 ... 342405 : - |
| To GenomeBrowser | habu1_scaffold2370:337519..342405 |
| Genes list of scaffold | habu1_scaffold2370 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| synaptic vesicle glycoprotein 2a | GO:0016021 GO:0022857 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2370_g08616.t1 | 1 | 1 | MFS_1 | 162 | 307 | 2.2e-17 | 62.8 | 1.2e-20 | 2.9e-17 | 62.4 |
| habu1_s2370_g08616.t1 | 1 | 1 | Sugar_tr | 181 | 304 | 2.9e-18 | 65.7 | 1.5e-21 | 3.8e-18 | 65.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2370_g08616.t1 | gi|301618208|ref|XP_002938508.1| | 0.0 | |
| habu1_s2370_g08616.t1 | gi|530603913|ref|XP_005293701.1| | PREDICTED: synaptic vesicle glycoprotein 2A isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s2370_g08616.t1 | gi|530603911|ref|XP_005293700.1| | PREDICTED: synaptic vesicle glycoprotein 2A isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2370_g08616.t1 | gi|591380176|ref|XP_007064633.1| | PREDICTED: synaptic vesicle glycoprotein 2A [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.4 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 0.4 |
| Nose | 0.1 |
| Brain-1 | 22.9 |
| Eye | 4.7 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 0.4 |
| Brain-2 | 23.0 |
| Spleen | 0.2 |
| Lung | 0.1 |
| Liver | 0.1 |
| Kidney | 0.2 |
| Pancreas | 0.6 |
| Small intestine | 0.0 |
| Large intestine | 0.3 |
| Stomach | 0.1 |
| heart | 9.0 |
| ovary | 0.2 |
| cheek muscle | 0.3 |
Transcript
| Transcript ID | habu1_s2370_g08616.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08616.t1 gctacctgcattgaacaagagtttcaatcggtggcccttgtttgtttgtttgtttaaacgtgtgccttcaagtcactctt gattcctggcaaaccggctgcaaactctggctctggaaagccttggggtctcccaagtgggacgtgtggcacaagctccc tcattgcacgtgtgtgattgctgagcaggtgggaggcccggataagatggcaatgcctgcacaggacccgcttcctcagt actcccctctcacccagaatggtcccacccaagagggagggctggctgtgcagggggtgagtcaagccggagaccgaagg ggtgtgtgtgtgtgtgagctggaaagacatccaaggcagcagtgtgggggggtaaccctccctttccatcggctggttct gtcctcggtgcctcgacttcttttacactcttccactgaaccctgtccccatcttgtccgttgggtcacctgagccgccc ttggatggctgggcttccacctgaccgtatgtctccttccttcgcagggccgctctcagtcagcccagtggaggcccctc tgcatcgctctccagggctcaggcacatgggtcgccacccgcgaagagctggtccttgaagggggagcgtctgccaaaag gaggagctgcctgccttgccggtgggtactgaatacggtgcctcccgcccagccgcccgcgccttcctccccctttcatc tccaggcccaaagggctggtgggagccatggacgaaggctttagagaccggaccgccttcatccgcggcgcaaaggacat cgccaaggaggtgaagaagcaggcgtccaagaaggtgggcaagggggtggaccgcgtgcaggacgagtacaccaagcgcg cctacgcgcgctttgaggaagaggatgatgatgactatcagccccaagatggatactaccgtggggagccctcggccgac gaggaaggggcctccagcgacgccacggaaggccacgatgaagacgacgaggtctacgagggggagtaccaggggatccc ccggaatgattccctgaagggtggagaccggctgacggccagcccggaggcagccaacgagttcagagacttcgatgacc tggaaggagataagaagaaggagaaggaagagctgtctcagcagtatgagctgattctgcaagagtgcggacatgggaaa ttccagtggacactctactttgtgctcggactggccctcatggctgacggagtggagatttttgtggtcggctttgtcct ccccagtgctgagaaggacatgtgcttgtcagactccaataaaggcatgctgggcctgattgtctacctgggaatgatgg tgggtgccttcctgtggggcggcctggcagaccggctggggcgcaggcagtgcctgctgatgtcactctcggtcaacagc gtctttgccttcttctcctccttcgtgcagggctacggcactttcctcttttgccggctgctctctggtgtgggcattgg ggggtccatccccattgttttctcctactactcggagttcctggcccaggagaagcgtggcgagcacctcagctggctct gcatgttctggatgattggcggcatctacgcctctgccatggcctgggccatcatcccccattacggtgagtccccgagg gcagggggaaagaaaagaccaggacgtccgcaggccgaaggagacccacgtggggctaaaccctttgcagtttggctgca gtgggatttcctcttgagccttgtttgtacacgttgacccatctgccctcccatgttgggcagcctcccgacccagcaag tagcagggtttgtcccccaatccgtaggagtctgccaggtgtgccctcatggggcttggaagctggggaggagagccagg gttcggccgttgttgctcccgatgggctggagctgtaggcttccatggctcagactttgggaggggggggaggagagtgt tcataggcagcggacattccccttttgtaaagccctcttctccatcatcccccccgtcactcagggtggagcttccaaat ggga |
|
Protein
| Protein ID | habu1_s2370_g08616.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08616.t1 MDEGFRDRTAFIRGAKDIAKEVKKQASKKVGKGVDRVQDEYTKRAYARFEEEDDDDYQPQDGYYRGEPSADEEGASSDAT EGHDEDDEVYEGEYQGIPRNDSLKGGDRLTASPEAANEFRDFDDLEGDKKKEKEELSQQYELILQECGHGKFQWTLYFVL GLALMADGVEIFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLMSLSVNSVFAFFSSFV QGYGTFLFCRLLSGVGIGGSIPIVFSYYSEFLAQEKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGESPRAGGKKRPGR PQAEGDPRGAKPFAVWLQWDFLLSLVCTR |
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