Gene
| Gene Model ID | habu1_s2370_g08620 |
|---|---|
| Locus | habu1_scaffold2370 : 426138 ... 431275 : - |
| To GenomeBrowser | habu1_scaffold2370:426138..431275 |
| Genes list of scaffold | habu1_scaffold2370 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| acidic leucine-rich nuclear phosphoprotein 32 family member e isoform x2 | GO:0000812 GO:0016023 GO:0019212 GO:0042393 GO:0043086 GO:0043486 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2370_g08620.t1 | 3 | 1 | LRR_8 | 45 | 102 | 8.4e-21 | 73.4 | 1.8e-09 | 3.8e-06 | 26.5 |
| habu1_s2370_g08620.t1 | 2 | 1 | LRR_4 | 45 | 86 | 8.4e-18 | 63.5 | 2.1e-09 | 4.4e-06 | 26.1 |
| habu1_s2370_g08620.t1 | 1 | 1 | LRR_9 | 46 | 149 | 2.9e-10 | 39.9 | 5.7e-13 | 1.2e-09 | 37.9 |
| habu1_s2370_g08620.t1 | 3 | 2 | LRR_8 | 67 | 127 | 8.4e-21 | 73.4 | 8.9e-14 | 1.9e-10 | 40.3 |
| habu1_s2370_g08620.t1 | 1 | 1 | LRR_6 | 89 | 106 | 1.1e-07 | 31.1 | 3.1e-07 | 0.00067 | 19.4 |
| habu1_s2370_g08620.t1 | 3 | 3 | LRR_8 | 90 | 148 | 8.4e-21 | 73.4 | 2.2e-11 | 4.7e-08 | 32.6 |
| habu1_s2370_g08620.t1 | 2 | 2 | LRR_4 | 90 | 132 | 8.4e-18 | 63.5 | 3.5e-14 | 7.5e-11 | 41.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2370_g08620.t1 | gi|530603957|ref|XP_005293723.1| | PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X3 [Chrysemys picta bellii] | 0.0 |
| habu1_s2370_g08620.t1 | gi|558215912|ref|XP_006134728.1| | PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s2370_g08620.t1 | gi|543380657|ref|XP_005533523.1| | PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X2 [Pseudopodoces humilis] | 0.0 |
| habu1_s2370_g08620.t1 | gi|530603929|ref|XP_005293709.1| | PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2370_g08620.t1 | gi|558215919|ref|XP_006134729.1| | PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X2 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 38.6 |
| Venom grand-1 | 24.2 |
| Pit, infrared sensing | 43.8 |
| Nose | 32.5 |
| Brain-1 | 36.3 |
| Eye | 59.0 |
| fetal fibroblast | 150.2 |
| venom gland-2 | 44.1 |
| Brain-2 | 50.8 |
| Spleen | 36.3 |
| Lung | 89.5 |
| Liver | 40.3 |
| Kidney | 29.5 |
| Pancreas | 37.3 |
| Small intestine | 22.3 |
| Large intestine | 35.2 |
| Stomach | 26.7 |
| heart | 94.7 |
| ovary | 72.7 |
| cheek muscle | 60.1 |
Transcript
| Transcript ID | habu1_s2370_g08620.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08620.t1 agccgagaggggtgggggagacactctcctttaatttggctctcctcctcctcctcctcctggccacgcatcccctcgcc tgcctgcctgcctgccgggtgatctccttaggtagtttggcgcccctccctcgctctccactttggagaggcttttccca gatggagatgaaaaagctggacatgaagaagcgcgttagcctggagttgaggaaccgcacgcccgagaaggtggcggagc tggtgcttgacaactgccgttctggcaatggtgaaattgaaggcctgaattcattcaaagagctggaatttctcagcatg gccaacacagagttgacctctttggccaaactccccactctgacgaagctccgaaggctggaattgagtgacaatctaat ttccggtggtctagaagtcctggcagagagatgtccaaatcttacatacctaaatttaagcggcaacaaaatcaaggatc tcagcactgttgaaactcttcaaaatctgaagagcctgaaaagcctcgatctgtttaactgcgagatcacaaatctgaaa gattacagagaaagtgtgtttgaactgctccaccaaatcacgtatctagatgggtttgatcaggatgataacgaggcccc ggattcagaagaggaagacgaggatgatggggatgaagatgaggatgaagatgatggcaaagctggtcccccaggcgaat atgaggaaaatgaagatgacgatgcttcagacttgggggagggggaagaggaagaggaagaggaagtgggtcttttatat ttgatgaaagaagagattcaggatgaagaggatgatgatgattacgtagaggagcgagagaatgaggaagaagacgccgc tgtcaggggggagaagagaaaacgtgcagctgaagacgaaggagatgacgacgacgattaagtcatagaaaatacaaata ggacccgattcatttttg |
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Protein
| Protein ID | habu1_s2370_g08620.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08620.t1 MKKLDMKKRVSLELRNRTPEKVAELVLDNCRSGNGEIEGLNSFKELEFLSMANTELTSLAKLPTLTKLRRLELSDNLISG GLEVLAERCPNLTYLNLSGNKIKDLSTVETLQNLKSLKSLDLFNCEITNLKDYRESVFELLHQITYLDGFDQDDNEAPDS EEEDEDDGDEDEDEDDGKAGPPGEYEENEDDDASDLGEGEEEEEEEVGLLYLMKEEIQDEEDDDDYVEERENEEEDAAVR GEKRKRAAEDEGDDDDD |
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